Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32672
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246...    30   0.81 
02_04_0213 + 20974712-20975413                                         30   0.81 
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563...    28   2.5  
07_03_0211 + 15239636-15241132                                         27   5.7  
05_01_0025 - 171012-171263,171361-171450,171536-171592,171907-17...    27   5.7  
03_05_0051 - 20288456-20291728                                         27   5.7  

>05_01_0313 -
           2461487-2461861,2461929-2462513,2462819-2464154,
           2464231-2464338,2464421-2464743
          Length = 908

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 26  TSFTASNCPTILGNSLELRTPRSVRTIGILPRKIVFECVPYN 151
           T + AS C   +G +LE  +P    T  +LPR   FE +P++
Sbjct: 341 TDYLASECA--IGINLERTSPPEETTYVLLPRAAYFEFIPFD 380


>02_04_0213 + 20974712-20975413
          Length = 233

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = +1

Query: 76  AKNASIRAYDRYPTAENRIRMRAL---QRDVKSRITEVRDARWSDFLXXLAPSQRSYYRL 246
           A  A + A  R    E   RM  L    RD ++   E  D  W DF   L        +L
Sbjct: 62  AATAPVAAARRVDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELL------LQL 115

Query: 247 XRTLKSDTVVTMPPLVGPSSRLAAFDDDEK 336
            R  +       PP   PS   AA DDD++
Sbjct: 116 RRRQQQRAAAGTPPSPSPSPAAAADDDDDE 145


>01_06_1154 -
           34955235-34955827,34955912-34956045,34956142-34956389,
           34956431-34956901
          Length = 481

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 IRMRALQRDVKSRITEVRDARWSDFLXXLAPSQRSYYRLXRTLK 261
           +R++AL  + +SR+ +  +  + DF+  L P  R Y R+   +K
Sbjct: 182 LRLKALNGE-RSRLAQSFEYNYGDFIPILRPFLRGYLRICEEVK 224


>07_03_0211 + 15239636-15241132
          Length = 498

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 38  ASNCPTILGNSLELRTPRSVRT 103
           +S CP++LG + EL TP  +RT
Sbjct: 341 SSRCPSLLGGAGELATPFVLRT 362


>05_01_0025 -
           171012-171263,171361-171450,171536-171592,171907-171939,
           172050-172124,172219-172308,172421-172522,172725-172795,
           173326-173479,173587-173663,174183-174219
          Length = 345

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 26  TSFTASNCPTILGNSLELRTPRSVRTIGILPRKIVFECVPYNAT*SLASPKSEMP 190
           T   A++ P  +G+S      R VR +  LP+      +P  A  +  SP++E+P
Sbjct: 212 TQVPAASVPPAIGSS-----ERVVRRVSSLPQSTALPALPTTAPAAEPSPRAEVP 261


>03_05_0051 - 20288456-20291728
          Length = 1090

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 61  RELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLXXLAPSQRSYY 240
           RE+L + ++S   +D   T  NR+++    R V  R   V D  WS+    LA    ++ 
Sbjct: 256 REMLESVSSSRFRHDSI-TNFNRLQVALRARLVSKRFLLVLDDVWSNDKITLAIEHENWQ 314

Query: 241 RLXRTLKS 264
           +L   LK+
Sbjct: 315 KLLSPLKA 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,926
Number of Sequences: 37544
Number of extensions: 207381
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)