Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32672
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    30   0.74 
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
           protein 1 protein.
          Length = 1963

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 176 SVMRDFTSRCRARIRIRFSAVGYLSYARIEAFLALRSSLISSGNLKR 36
           +V  D +SR    IRI F   GY+S A IE +L  +S ++     +R
Sbjct: 240 TVKNDNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVLRQAQDER 286


>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical protein
            C14C10.4 protein.
          Length = 1058

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 31   LHRFKLPDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSD 201
            + R  LP  +R  +   NAS RA+ + P     I+ R  ++ ++S  T VR A  SD
Sbjct: 878  IERNDLPGALRMAVEETNASNRAFGQVPIMIEAIK-RNDRQTLESVHTMVRSAHSSD 933


>AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical
           protein Y75B12B.6 protein.
          Length = 896

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 166 RITEVRDARWSDFLXXLAPSQRSYYRLXRTLKSDTVVT 279
           RI +VR  + +DF   L PS+RSY     T+ S T +T
Sbjct: 66  RIYDVRAGKPTDF--ELVPSERSYEPNFLTIVSGTSIT 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,790,581
Number of Sequences: 27780
Number of extensions: 158605
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)