Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32672
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 274 VTMPPLVGPSSRLAAFDDDEKAELLADTLQT 366
           +T PP   PSS+  A    + A LL+ T  T
Sbjct: 675 LTSPPARSPSSQAQASQCPQTASLLSSTHST 705


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 112 PTAENRIRMRALQRDVKSRI 171
           PT   + RMRAL  D  SR+
Sbjct: 388 PTPAQKARMRALNIDRVSRV 407


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 286 PLVGPSSRLAAFDD 327
           P++G SSR +AF D
Sbjct: 124 PVIGISSRDSAFSD 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,329
Number of Sequences: 438
Number of extensions: 2028
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)