Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32671
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    28   1.7  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    28   1.7  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    27   2.2  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    27   3.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   6.7  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   6.7  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   6.7  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   8.9  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   8.9  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   8.9  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
 Frame = +1

Query: 61  RPIYYYRFDY---VGELNIAQKIFFSLGLKYAMHMDELGYL----FKNDFQKDVEPTPED 219
           +PIY    DY    G+LN A  +   + + Y     +  +L     K+D +++   T E 
Sbjct: 545 KPIYQKWLDYESNYGDLNAAIALSQRMAVVYPQESTQAIFLSRYGLKDDAEEEERETKEA 604

Query: 220 IKMRERIVRLWTNFAKSGNPIPDENH 297
            K+RE  VRL       GN  P   H
Sbjct: 605 EKIRELSVRL-----NGGNGFPGHVH 625


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
 Frame = +1

Query: 328 NDNLYCLNLNSELTLISNPDKEKMDFWEKI-------------YDKHYRIWDETTNQSKN 468
           N +L  ++L S+L  I  P+K + + WE               YD   +++   T+ S  
Sbjct: 204 NLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVYSGQTSFSLE 263

Query: 469 EPQIXTFKKEPEIDTYQNEPEIDXCKKETEIXTYKNE 579
           E +    +  PE   YQNE  I+  +      ++KN+
Sbjct: 264 EIEKDLGRSLPEYPAYQNEEGINALRNVLVAFSWKNQ 300


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = -2

Query: 279 RVPRFSEISPEP---DNPL---THLDIFRSRL-HVFLEVILEQIAQLVHVHSVLQSKTKE 121
           R+P F EI        +PL   +H+D+  S + H+F +    ++  L+HVH        +
Sbjct: 676 RLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGK 735

Query: 120 DLLGDIQFAHIIKSIVINWTVRNLEQIFY 34
               D+QF   +  I  + T     +  Y
Sbjct: 736 RKTQDVQFYREVSDIQFDETGNKKRKYMY 764


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +1

Query: 28  RYIKYLLQVTNRPIYYYRFDYVGELNIAQKIFFSLGLKYAMHMDELGYLFKNDFQKDVEP 207
           RY+K+L  V N   Y Y+F +     I         LKY   +DEL   +K + Q D  P
Sbjct: 191 RYLKHLKSVPNVSYYIYKFPF----KILADKSLEDNLKY---LDELDENYKKECQVD-NP 242

Query: 208 TP 213
            P
Sbjct: 243 QP 244


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 238  IVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYCLNLNSELTLI 375
            +V+ W N A SGN + D        W+  +   LY   L+S + +I
Sbjct: 1760 LVKTWWNEAASGNNLADLIIQHLARWISSSKSYLYSPLLSSHVEVI 1805


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 367 TLISNPDKEKMDFWEKIYDKHYRIWDETTNQSKNEPQIXTFKKEPE-IDTYQNEPEIDXC 543
           T+ S+P K    +W   Y+K   I   T +  K       ++ +PE  +   +  ++   
Sbjct: 146 TINSSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARKYQTKPEKFNENSSISQVTSA 205

Query: 544 KKETEIXTYKNEP 582
            K T+  ++  +P
Sbjct: 206 IKATKAFSHLTQP 218


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 735 RFNFGSVDLVRVTHDFCPLF----GXAGLLFMTWVMTTVSITDTISGSCLG 595
           R N    +LVRVTH F  +F    G   +LF  ++  T+S   T  G  LG
Sbjct: 386 RPNASGKELVRVTHVFVTIFAVCMGALAVLF-NYIGITISWIITFIGIALG 435


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 220 IKMRERIVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYC 345
           IK  E I+R  TN +K     P +N YLN   L +   +L C
Sbjct: 247 IKYLEHILRTNTNGSKIFTKSPVKNLYLNWPQLVLDYGSLLC 288


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 169 YLFKNDFQKDVEPTPEDIKMRERIVRLWTNFAKSGNPIPDENHYLNTNWL 318
           YLF+ +++K         + RE++   W  +AK   P P  +      WL
Sbjct: 101 YLFE-EYKKQQGTNKSHSEAREKVTEAWFAYAKKNLPEPPSSMSEWPQWL 149


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 421 DKHYRIWDETTNQSKN 468
           DK  RIWD T+N+ K+
Sbjct: 242 DKTIRIWDSTSNKKKS 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,778
Number of Sequences: 5004
Number of extensions: 60669
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)