Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32671
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 31 1.3
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 30 2.3
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028... 29 5.3
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 5.3
09_03_0169 - 13010909-13012033 28 7.0
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 28 7.0
02_04_0492 - 23424745-23425890 28 7.0
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 28 9.3
07_03_0250 - 15822602-15822650,15822744-15822814,15822908-158230... 28 9.3
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -2
Query: 261 EISPEPDNPLTHLDIFRSRLH-VFLEVILEQIAQLVHVHSVLQSKTKEDLLGDIQFAHI 88
E+ PE D +L+I SR+H +F + L+ A++ VLQ+K +E +L D ++ +
Sbjct: 438 ELEPETDPVWHYLNIQNSRIHGLFEKCTLDHEARM----EVLQNKIREKILSDAKWRQL 492
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 292 NHYLNTNWLPVTNDNLYCLNLNSELTLISNPDKEKMDFWEKIYD 423
N Y+N +++ VT DN ++++ L D DFWE +Y+
Sbjct: 114 NDYINASFIKVTEDNRVAKFISTQGPLAKTFD----DFWEMVYE 153
>05_03_0408 +
13601576-13601748,13601795-13602104,13602597-13602834,
13603014-13603364,13603457-13603542,13603685-13603759,
13604241-13604542,13605359-13605622,13606032-13606806
Length = 857
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 286 DENHYLNTNWLPVTNDNLYCLNLNSEL-TLISNPDKEKMDFWEKIYD-KHYRIWDETTNQ 459
D ++NT++LP L EL +L N E+ D WE+IYD +Y N
Sbjct: 154 DRVFFINTSYLPDKTPEALRLLREEELRSLRGNGRGERKD-WERIYDFDYYNDLGNPDND 212
Query: 460 SKNEPQIXTFKKEP 501
P + K P
Sbjct: 213 DHVRPVLGGTKTHP 226
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/68 (22%), Positives = 28/68 (41%)
Frame = -2
Query: 309 GVQIVVFVRYRVPRFSEISPEPDNPLTHLDIFRSRLHVFLEVILEQIAQLVHVHSVLQSK 130
G +++ + SE + LTH+ IF + + + +H++L S
Sbjct: 808 GFSLLLTTLHSFQNDSENEETESSLLTHMKIFGFLMRAMTAAVYSNPVNRIRLHTILSSN 867
Query: 129 TKEDLLGD 106
T DLL +
Sbjct: 868 TFYDLLSE 875
>09_03_0169 - 13010909-13012033
Length = 374
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 454 WSFHPRFCSVCRRFSPKSPSSLCP 383
WS HP VCR + +S +SLCP
Sbjct: 27 WSSHPSVALVCRHW--RSAASLCP 48
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 469 EPQIXTFKKEPEIDTYQNEPEIDXCKKETEIXTYKNEP 582
+PQ T+ +P+ +TYQ +P+ + + ++ Y +P
Sbjct: 235 QPQGQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKP 272
>02_04_0492 - 23424745-23425890
Length = 381
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -1
Query: 457 GWSFHPRFCSVCRRF----SPKSPSSLCP 383
GWS HP F S CR + SP P+ + P
Sbjct: 32 GWSTHPSFASTCRHWRSAVSPFYPAWITP 60
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 477 LWFVFRLVGRFIPDSVVFVV 418
LWFVF L+ FI +VVF++
Sbjct: 716 LWFVFSLIIAFIAGTVVFIM 735
>07_03_0250 -
15822602-15822650,15822744-15822814,15822908-15823006,
15823235-15823309,15823808-15823885,15823990-15824098,
15824167-15824216,15824310-15824411,15824994-15825071,
15825419-15825685,15825863-15825962,15826137-15826315
Length = 418
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 256 NFAKSGNPIPDENHYLNTNWLPVTNDNLYCLN 351
NF+KSG + E +++N+ P T + LY +N
Sbjct: 186 NFSKSGRDLFIEIQKIDSNYYPETLNQLYIIN 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,151,412
Number of Sequences: 37544
Number of extensions: 357121
Number of successful extensions: 915
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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