Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32670
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   117   8e-28
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   4.5  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    25   7.8  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  117 bits (282), Expect = 8e-28
 Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
 Frame = +1

Query: 133 APNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLF 306
           +P  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L+
Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLY 176

Query: 307 LTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLI 465
           +TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+
Sbjct: 177 MTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLV 229



 Score = 30.3 bits (65), Expect = 0.16
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 17  GKHTILVNKGLR*GIMLIYYLRNFFLY*IFLSFFP*KIMP 136
           G HT  V KGL+ G ML      F    IF +FF   + P
Sbjct: 79  GAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSP 118


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 268 IENNFSQTKQRLFLTILLGFYFTILQAYE 354
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 218 IVFNKGIWNGLNGVILEGGHILPISIFGA 132
           +  +K + NG+N +++EGG  L    FG+
Sbjct: 173 VALDKLLQNGVNRIMVEGGAELLAKAFGS 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,146
Number of Sequences: 5004
Number of extensions: 31433
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)