Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32668
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   0.93 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   6.6  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   8.7  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
 Frame = -1

Query: 404 ARTSDIFRRRDRLRNYFVVKVLRVKPNVSHGL*RVRLLYKRIDHVFD*IGPIIANFEFRF 225
           ARTS+I      L+   V  VL +   V+H +     +  RI ++F  +  +  +F+ + 
Sbjct: 378 ARTSEIQHLSVLLQK--VANVLNILSKVAHEIPLSEAVVIRIVYLFPKVSTLDNSFKTKL 435

Query: 224 PN-RSERLKYLRLEQRYQAF*FASRVVHYREDTVVHK-LSRYWRNPLA 87
           PN  S    +L+    +Q   +  R+  Y+ D ++ + L+ +   P A
Sbjct: 436 PNCNSSSFDFLK-APLFQTLQYLFRLYPYQRDFIIEESLTNFSHLPTA 482


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 75  WYIISGVANPFYYFFTYLQC 16
           W     +AN F+ F T LQC
Sbjct: 149 WNQFKNIANAFFLFVTLLQC 168


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 186 FQPKILKTFTSIWKSEFEIC 245
           FQ K +K  T++WKS  ++C
Sbjct: 92  FQYKNVKNVTAMWKSSGDVC 111


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 474 EDELSSLNWNYMQCNSLSDVIGEIVKLFKDYGTF 575
           +DE S  N+    CN++ +  G  V+L  DY  F
Sbjct: 354 QDEASQDNYLKEACNAIKEAQGSGVELSPDYVEF 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,196
Number of Sequences: 5004
Number of extensions: 44649
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)