Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32668
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    29   3.9  
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    29   3.9  
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9...    28   6.8  
03_02_0004 - 4869853-4871106                                           28   6.8  

>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 162 ELESLITLFQPKILKTFTSIWKSEFEICDDWS-DLIEYVI 278
           E+ S +T F P I     S+W    E  +DW+ D  E ++
Sbjct: 602 EIVSYMTFFSPSISLDMWSLWPLMMEALNDWAIDFFENIL 641


>02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,
            3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 562  SLNNFT--ISPITSDRELHCM*FQFNELS 482
            S N+FT  ISPI    E+H + F FN LS
Sbjct: 1297 SYNSFTGEISPIIGQLEVHVLDFSFNNLS 1325


>05_01_0002 -
           8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
           9802-9902,10016-10651,10820-10899,11014-11673,
           11787-12041,12154-12281,12515-12669,12735-12919,
           13020-13049,13164-13239,13371-13504,13703-13994,
           14400-14567,14647-14745,14843-15014,15103-15281
          Length = 1352

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 483 LSSLNWNYMQCNSLSDVIGEIVKLFKDY 566
           L  LN   +   S+ DV GE+  LF+DY
Sbjct: 131 LGILNMYRLHNKSIQDVYGEVAALFRDY 158


>03_02_0004 - 4869853-4871106
          Length = 417

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 159 GELESLITLFQPKILKTFTSIWKSEFEICDDWSDLIEYVINTF 287
           G L++L  LF+PK    +   WKS   +   +  ++  V+N F
Sbjct: 311 GSLQTLAMLFRPKTTNRYRKYWKSYHHLV-GYGCVVVGVVNVF 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,621
Number of Sequences: 37544
Number of extensions: 265466
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)