Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32668
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical pr...    31   0.49 
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    31   0.86 
U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine rece...    28   6.1  
Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z78419-5|CAB01703.1|  313|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical
           protein T01G5.3 protein.
          Length = 334

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 313 VCNVCGFFINVLITYSIRSDQSSQISN 233
           V   C FFINVL  Y ++ D+  QI N
Sbjct: 13  VGGACSFFINVLFIYIVQDDKKVQIGN 39


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 120 QTLPLLAXXXXSNPYWYIISGVANPFYYFFTYLQCTGTLY 1
           +T+PL+     +   +YI +   N  YYF  Y++CTG ++
Sbjct: 76  RTIPLIREFFFNYQSFYIAAASYNSIYYFL-YIRCTGIIF 114


>U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine
           receptor, class v protein28 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 75  WYIISGVANPFYYFFTYLQCTGTLY 1
           +YI +G  N  YYF  Y++C G ++
Sbjct: 84  YYIAAGTYNSIYYFL-YIRCAGIVF 107


>Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical
           protein R10D12.1 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 298 GFFINVLITYSIRSDQSSQISNSDFQIEVNVLSILGWNNVIRLSSSPPAWCITVKIQSFT 119
           G FI  L T+     Q+S I +     E+   S+ GW +V  L +       T+    FT
Sbjct: 176 GLFIAALTTFG----QTSSIFSMPVAGEL-CTSVFGWKSVFYLHAIISLVVFTIWFALFT 230

Query: 118 NSPVTGVIL*QQPVLVHYFGRSE 50
           +SP    ++    +    FG+SE
Sbjct: 231 DSPEDNKLVRPAELAEIEFGKSE 253


>Z78419-5|CAB01703.1|  313|Caenorhabditis elegans Hypothetical
           protein F26A3.5 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 183 LFQPKILKTFTSIWKSEFEICDDWSDLI--EYVINTFIKKPHTLQTM 317
           +F   +L T+ S+   E    DDW DL+    +I   ++   T+Q M
Sbjct: 248 VFTSILLATYLSLCSDEANNIDDWKDLLRNNAIIKKAVEHSDTMQKM 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,281
Number of Sequences: 27780
Number of extensions: 247558
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)