Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32668
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 296 LLYKRIDHVFD*IGPIIANFEF 231
           L+ K+I H FD + P+IA F+F
Sbjct: 238 LVGKKITHFFDLVRPLIA-FKF 258


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 544 ISPITSDRELH 512
           ISP T+DR+LH
Sbjct: 613 ISPFTADRDLH 623


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 99  TPVTGEFVNDCIFTVMHHAGGELESL 176
           T +  E  NDC +  M    GE+ S+
Sbjct: 11  TELLQELTNDCRYDKMTRPPGEINSI 36


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 333 DTENFDDEIVSKPVTTPEDVAG 398
           DT NFD+         P+D++G
Sbjct: 652 DTTNFDEYPPDSDPPPPDDISG 673


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 511 NVILYPMLSARL*SCSKITELFKSRQSIITQLCK 612
           N+ +YP     +  CS+I+E + S       LCK
Sbjct: 642 NLNVYPEFQENVQLCSEISESYSSNNK---TLCK 672


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,820
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)