Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32661
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 170 2e-43
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 3.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 4.0
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.3
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 5.3
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.2
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.2
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 170 bits (413), Expect = 2e-43
Identities = 82/148 (55%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Frame = +1
Query: 130 LYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP 306
L IT A+E+E+ KK+I+++VP P LKAF K Q RL RELEKKF+ +HV+F+ R+ILP
Sbjct: 43 LQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILP 102
Query: 307 KPSHKTRVANKQKRPRSRTLTSVYDAILEDLXFPAEIVGKRIRVKLDGSQLIXVHLDKNQ 486
KP K+RV QKRPRSRTLT+V++AILED+ FP EI+GKR R DG + I V LD
Sbjct: 103 KPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRD 160
Query: 487 QTTIXHKVDTFQXVYKKLTGREVXFEXP 570
T+ +K+ +F VY KLTG+ V FE P
Sbjct: 161 ANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 314 LGLGRILRSPTKTTCLPLNFFSSSRTS 234
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 FLRDLDLAGAGRTRNQLRPQSPTSGSFTLQKLKKLNYTIRSRS 181
FL D A G+T + +PQ+ G + L K N T SR+
Sbjct: 188 FLEDKRTASYGKTHKRFQPQNKNLGK---ESLSKKNNTTNSRN 227
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 FLRDLDLAGAGRTRNQLRPQSPTSGSFTLQKLKKLNYTIRSRS 181
FL D A G+T + +PQ+ G + L K N T SR+
Sbjct: 188 FLEDKRTASYGKTHKRFQPQNKNLGK---ESLSKKNNTTNSRN 227
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 FLRDLDLAGAGRTRNQLRPQSPTSGSFTLQKLKKLNYTIRSRS 181
FL D A G+T + +PQ+ G + L K N T SR+
Sbjct: 188 FLEDKRTASYGKTHKRFQPQNKNLGK---ESLSKKNNTTNSRN 227
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 287 ETVRSCLSPATKPVLLTNKRGHAQ 358
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 FLRDLDLAGAGRTRNQLRPQSPTSGSFTLQKLKKLNYTIRSRS 181
FL D A G+T + +PQ+ G + L K N T SR+
Sbjct: 188 FLEDKRTASYGKTHKRFQPQNKNLGK---ESLSKKNNTTNSRN 227
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 184 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 276
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 FLRDLDLAGAGRTRNQLRPQSPTSGSFTLQKLKKLNYTIRSRS 181
FL D A G+T + +PQ+ G + L K N T SR+
Sbjct: 188 FLEDKRTASYGKTHKRFQPQNKNLGK---ESLSKKNNTTNSRN 227
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 FLRDLDLAGAGRTRNQLRPQSPTSGSFTLQKLKKLNYTIRSRS 181
FL D A G+T + +PQ+ G + L K N T SR+
Sbjct: 188 FLEDKRTASYGKTHKRFQPQNKNLGK---ESLSKKNNTTNSRN 227
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 342 KEATLKDIDLCVRCYPRGLGLPC 410
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 563 SKXTSRPVSFLXTXWKVSTLCXIVVCWFLSKCTLMSCE 450
SK +S + W+ S L +++ W S CT SCE
Sbjct: 343 SKEQQNKISGFSSIWR-SCLEPLIILWPRSLCTEESCE 379
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 159 FNFFSFCNVKLPEVGL*GRSWF 94
+ FF+FC V L G+ SWF
Sbjct: 482 YKFFAFCGVPLFPPGISTNSWF 503
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 94 KPTPTSKPNFGELYITKAKEIELH 165
KPT KPN +L +T+ K I H
Sbjct: 565 KPTVVEKPNAPDLKVTQGKVIFSH 588
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 53 FLRDLDLAGAGRTRNQLRPQSPTSGSFTLQKLKKLNYTIRSRS 181
FL D A G+T + +PQ+ G + L K N T SR+
Sbjct: 188 FLEDKRTASYGKTHKRFQPQNKNLGK---EFLPKKNNTTNSRN 227
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 491 VCWFLSKCTLMSCEPSNLTLMR 426
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,849
Number of Sequences: 5004
Number of extensions: 39912
Number of successful extensions: 121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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