Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32661
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   153   1e-37
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   151   3e-37
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     73   2e-13
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141...    30   1.8  
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   2.4  
03_02_0488 - 8824980-8825267,8825364-8827775                           28   5.4  
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258...    28   7.2  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  153 bits (371), Expect = 1e-37
 Identities = 75/154 (48%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
 Frame = +1

Query: 112 KPNFGELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 288
           K    +LYI  A ++++  N+K+++I+VP    KAF+KI +RLVRELEKKFSGK VV V 
Sbjct: 38  KSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVA 97

Query: 289 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLXFPAEIVGKRIRVKLDGSQLIXV 468
            R+I+  P   + V    +RPR+RTLT+V+D ILED+ +PAEIVGKRIR +LDG+++I +
Sbjct: 98  TRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKI 153

Query: 469 HLDKNQQTTIXHKVDTFQXVYKKLTGREVXFEXP 570
            LD  ++    +K++TF  VY++L G++V FE P
Sbjct: 154 FLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  151 bits (367), Expect = 3e-37
 Identities = 75/154 (48%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
 Frame = +1

Query: 112 KPNFGELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVG 288
           K +  +LYI  A +++L  N+K++IIYVP    KA++KI +RLVRELEKKFSGK VV V 
Sbjct: 51  KSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVA 110

Query: 289 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLXFPAEIVGKRIRVKLDGSQLIXV 468
            R+I+  P   + V     RPR+RTLT+V+D ILED+ +PAEIVGKR+R  LDG +++ +
Sbjct: 111 TRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKI 166

Query: 469 HLDKNQQTTIXHKVDTFQXVYKKLTGREVXFEXP 570
            LD  ++    +K+DTF  VY++L G++V F+ P
Sbjct: 167 FLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 41/98 (41%), Positives = 62/98 (63%)
 Frame = +1

Query: 130 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 309
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88

Query: 310 PSHKTRVANKQKRPRSRTLTSVYDAILEDLXFPAEIVG 423
           P +K    +    PR+RTL +V+D ILED+     ++G
Sbjct: 89  PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123


>12_01_0191 +
           1413287-1413346,1413504-1413632,1416819-1416998,
           1417747-1417938,1418533-1418673,1418785-1418912,
           1419088-1419262,1419664-1419852,1420628-1420749,
           1420829-1420874
          Length = 453

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 349 PRSRTLTSVYDAILEDLXFPAEIVGKRI 432
           P +RTLT+ +D IL+D+   A+I GK +
Sbjct: 86  PNTRTLTNAHDGILDDINC-AQIAGKHV 112


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 344 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 228
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 30  KASGAEADSFETSISQALVELETNSDL 110
           ++SG   + FET +S A++E+E N+ L
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASL 331


>03_05_0961 -
           29224548-29225125,29225286-29225308,29225736-29225864,
           29226533-29228217
          Length = 804

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 38  RC*GGFLRDLDLAGAGRTR-NQLRPQSPTSGSFTLQKLK 151
           RC GG +  +DLAG  RTR  +L P+    G   L +L+
Sbjct: 75  RCSGGRVVSVDLAGLRRTRLGRLAPRFAVDGLRNLTRLE 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,409
Number of Sequences: 37544
Number of extensions: 271145
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)