Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32661
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 364 LTSVYDAILEDLXFPAEIVGKRIRVKLDGSQLIXVHLDKNQQTTIXHKVDTFQXVYK 534
           L S Y+ ++  +   ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 364 LTSVYDAILEDLXFPAEIVGKRIRVKLDGSQLIXVHLDKNQQTTIXHKVDTFQXVYK 534
           L S Y+ ++  +   ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 133 KAPRSWALRSELVSSSTSACEIEVS 59
           K+P   +L + L+ + T  C I+VS
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVS 251


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 133 KAPRSWALRSELVSSSTSACEIEVS 59
           K+P   +L + L+ + T  C I+VS
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVS 251


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 133 KAPRSWALRSELVSSSTSACEIEVS 59
           K+P   +L + L+ + T  C I+VS
Sbjct: 278 KSPSLTSLNAYLIKNQTITCPIKVS 302


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 133 KAPRSWALRSELVSSSTSACEIEVS 59
           K+P   +L + L+ + T  C I+VS
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVS 251


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 430 IRVKLDGSQLIXVHLDKNQQTTIXHKVDTFQXVYK 534
           +++KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 52  VKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = +1

Query: 157 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 336
           EL   KS +  +P+P  +    +      + +KK +G    F   +        + + + 
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSA 611

Query: 337 KQKRPRSRTLTSVYDAIL 390
           K++R  ++TL  V    L
Sbjct: 612 KKERKATKTLAIVLGVFL 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,728
Number of Sequences: 438
Number of extensions: 2439
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)