Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32652
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 33 0.21
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 29 1.9
03_01_0303 + 2369607-2371958 29 2.5
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411... 29 3.4
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 4.4
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 28 4.4
06_03_1126 + 27805982-27806475,27806617-27807202 28 4.4
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490... 28 5.9
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 27 7.7
08_02_1461 - 27299891-27301870 27 7.7
07_03_0574 - 19629875-19631032 27 7.7
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 27 7.7
04_01_0128 + 1398190-1398480,1399245-1399505 27 7.7
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 27 7.7
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 27 7.7
02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112 27 7.7
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 298 KTFGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 417
K G ++ RCTGV I G N +I T DFHGE
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -3
Query: 491 QQVLPPVITQIIILRVSVLLHDVIPSPWKSIVNIC*VRISLE--KLVPACGIRTPVHRFN 318
Q ++ +++I++ + L H+ + S +N C V+ SL+ + PACG + P H +
Sbjct: 305 QNLIETSLSKIVLKDYNPLQHE---RGFHSRLN-CLVKDSLQFGSIAPACGAKDPHHLDS 360
Query: 317 TNAPNVLSF 291
+ P +L+F
Sbjct: 361 LSEPQILTF 369
>03_01_0303 + 2369607-2371958
Length = 783
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 71 YRISSCIRKLQIRRFTHGGHRAQTPATTPADSATKPTY 184
+ ++C RKL RF GHRA P T P+D+ + Y
Sbjct: 186 FNATNCNRKLIGARFYSKGHRANYP-TNPSDAVSLMEY 222
>03_06_0720 +
35739383-35739391,35739802-35740275,35740695-35741122,
35741273-35741351
Length = 329
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 537 HGRNRQGGGTYPRGLTTGPTTSNY 466
HG+ R+GG PRG TT S Y
Sbjct: 18 HGQQRRGGSPPPRGRTTSVYRSGY 41
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 64 AGVSNLILYPEAANQTLYTRRASRADSGNYTCRLSNETHIQTHTVRLDILXTCLS 228
AG+ +L E Q LYT+ + D TCR + E + + D C++
Sbjct: 338 AGMDKAVLKSEETTQDLYTKMMAMIDKLLETCRDTKEDYTMSVDSNGDAAAQCIN 392
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 14 EFFFLSGSKTVSRIRGRLAYRISSCIRKLQIRRFTHGGHRAQTPATTPAD 163
+ FF+S S +VSRIR + Y +S + Q R G H + AT P D
Sbjct: 96 KIFFISWSPSVSRIRAKTIYAVS----RNQFRHELDGVH-FEIQATDPDD 140
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 107 RRFTHGGHRAQTPATTPADSATK 175
RR GG RA++PA T D+AT+
Sbjct: 256 RRTRAGGRRARSPAATDTDTATE 278
>07_01_0654 -
4900509-4900518,4900626-4900709,4900844-4901377,
4901462-4901619,4901703-4901832,4901918-4901999,
4902097-4902230,4902314-4902410,4902512-4902788,
4902881-4903024
Length = 549
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 352 AGTNFSNEIRTQQMFTIDFHGEGITSC-NKTETRKIIICVITGGRTCCESARVGTTALPI 528
+GT+ + ++ +D G GIT+C + E +K ++ G + RV +
Sbjct: 29 SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88
Query: 529 SAV 537
+AV
Sbjct: 89 NAV 91
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 14 EFFFLSGSKTVSRIRGRLAYRISSCIRKLQIRRFTHGGHRAQTPATTPAD 163
+ FF++ S +VSRIR ++ Y S K + RR G H + AT P++
Sbjct: 90 KIFFVAWSPSVSRIRAKMLYATS----KERFRRELDGVH-YEIQATDPSE 134
>08_02_1461 - 27299891-27301870
Length = 659
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 543 LLHGRNRQGGGTYPRGLTTGPTTS 472
LL GR R GGG + RGL P S
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVS 313
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -3
Query: 365 KLVPACGIRTPVHRFNTNAPNV---LSFSPRRLIFIVKDLTV*KLWLNADRHVXSISSLT 195
+LVP C + R + ++ L+ +P R + +D K W + RH+ S+ S
Sbjct: 254 ELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVWEDFRPPKEWFSCGRHLVSLGSGK 313
Query: 194 VCV 186
+CV
Sbjct: 314 LCV 316
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Frame = +1
Query: 409 HGEGITSC---NKTETRKIIICVITGGRTCCESA----RVGTTALPISAVKQ*C 549
H E C N+ + + +++CV R CC A R LPI+ V C
Sbjct: 433 HNEDSKQCAIENRPQVQLLVVCVTAQPRLCCPPAMVAGREALACLPIAQVVSKC 486
>04_01_0128 + 1398190-1398480,1399245-1399505
Length = 183
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 561 SNRNALLLHGRNRQGGGTYPRGLTTGPTTSN 469
+ NA HGR PR ++T PTT+N
Sbjct: 57 NGNNAEDHHGRQAAAAAVVPRAVSTRPTTTN 87
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 14 EFFFLSGSKTVSRIRGRLAYRISSCIRKLQIRRFTHGGHRAQTPATTP 157
+ FF++ S + SRIR ++ Y S K ++ F H +A P TP
Sbjct: 90 KIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGF-HYEIQATDPTETP 136
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 27.5 bits (58), Expect = 7.7
Identities = 22/95 (23%), Positives = 41/95 (43%)
Frame = +1
Query: 64 AGVSNLILYPEAANQTLYTRRASRADSGNYTCRLSNETHIQTHTVRLDILXTCLSALSQS 243
A ++ + P AA L A+ A + N+TC +++ T ++ + T L
Sbjct: 2 ASLTAALATPAAAALLLLVLLAAPASAANFTCAVASGTTCKSAILYTSPNATTYGNLVAR 61
Query: 244 FHTVRSFTMKISRRGLKDKTFGAFVLKRCTGVRIP 348
F+T + + GL D T + + + V+IP
Sbjct: 62 FNTT-TLPDLLGANGLPDGTLSSAPVAANSTVKIP 95
>02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112
Length = 747
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 64 AGVSNLILYPEAANQTLYTRRASRADSGNYTCRLSNETH 180
AG+ +L E Q LYT+ + D TCR + E +
Sbjct: 211 AGIDKEVLKSEETTQDLYTKMMAMIDKMLETCRNTKEDY 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,274,853
Number of Sequences: 37544
Number of extensions: 319372
Number of successful extensions: 949
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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