Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32652
(562 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 27 0.098
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 27 0.17
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 25 0.52
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 25 0.52
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 3.7
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 22 4.9
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 6.4
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 6.4
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 27.5 bits (58), Expect = 0.098
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 109 TLYTRRASRADSGNYTCR-LSNETHIQTHTVRL 204
+LY + +GNYTC + N+ +QTH + +
Sbjct: 366 SLYLTKVQLIHAGNYTCHAVRNQDVVQTHVLTI 398
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 26.6 bits (56), Expect = 0.17
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 109 TLYTRRASRADSGNYTCRLSNETHIQTHTVRLDILXTCLS-ALSQSFHTVRSFTMKI 276
+L+ + R D+G Y+C + N T T +L + S ++ + T S TMK+
Sbjct: 1330 SLFIKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKV 1386
Score = 23.4 bits (48), Expect = 1.6
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +1
Query: 109 TLYTRRASRADSGNYTCRLSNETHIQTHTVRLDILXTCLSALSQSFHTV---RSFTMKIS 279
TL R A DSG Y C ++N ++ L + + + S T+ R T +
Sbjct: 271 TLIIREARVEDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCN 330
Query: 280 RRGLKDKT 303
RG KT
Sbjct: 331 VRGNPIKT 338
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 25.0 bits (52), Expect = 0.52
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 139 DSGNYTCRLSNETHIQTHTVRLDI 210
D G Y+C N TH RL++
Sbjct: 493 DGGEYSCMAENRAGKVTHAARLNV 516
Score = 22.6 bits (46), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 91 PEAANQTLYTRRASRADSGNYTCRLSN 171
P+ L A +DSG Y C+ SN
Sbjct: 865 PDGVIAQLQISSAEASDSGAYFCQASN 891
Score = 21.0 bits (42), Expect = 8.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +1
Query: 139 DSGNYTCRLSN 171
D G+YTC++ N
Sbjct: 1378 DGGDYTCQVEN 1388
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 25.0 bits (52), Expect = 0.52
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 139 DSGNYTCRLSNETHIQTHTVRLDI 210
D G Y+C N TH RL++
Sbjct: 493 DGGEYSCMAENRAGKVTHAARLNV 516
Score = 23.0 bits (47), Expect = 2.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 103 NQTLYTRRASRADSGNYTCRLSNETHIQTHTVRL 204
N L S +GNY+C N +HT RL
Sbjct: 667 NSILMIEHLSPDHNGNYSCVARNLAAEVSHTQRL 700
Score = 22.6 bits (46), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 91 PEAANQTLYTRRASRADSGNYTCRLSN 171
P+ L A +DSG Y C+ SN
Sbjct: 861 PDGVIAQLQISSAEASDSGAYFCQASN 887
Score = 21.0 bits (42), Expect = 8.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +1
Query: 139 DSGNYTCRLSN 171
D G+YTC++ N
Sbjct: 1374 DGGDYTCQVEN 1384
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 3.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 198 DRVRLYVGFVAESAGVVAGVCARCP 124
DR++LY+ F+ +AG + G+ P
Sbjct: 479 DRLQLYIFFLVTTAGTI-GILMDAP 502
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 21.8 bits (44), Expect = 4.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +1
Query: 127 ASRADSGNYTCRLSNETHIQTHTVRLD 207
A++ D+G Y C+ N+ + R D
Sbjct: 90 ATQKDAGYYECQADNQYAVDRRGFRTD 116
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.4 bits (43), Expect = 6.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 468 YANYNFAGFSF 436
Y NYN GF+F
Sbjct: 223 YGNYNINGFNF 233
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 6.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 430 CNKTETRKIIICVI 471
CNKT RK+I V+
Sbjct: 203 CNKTAVRKVISGVV 216
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,502
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -