Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32646
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 34 0.029
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 31 0.21
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 29 1.5
04_03_0910 + 20751014-20753437 27 4.4
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 27 4.4
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 27 5.9
03_05_0935 - 28948368-28948769,28949028-28949120,28949240-289493... 27 5.9
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 26 7.7
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 34.3 bits (75), Expect = 0.029
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 199 SVLPNKTFVAALNNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKN 357
+ LPN +A+ + SP V + GS YE A G SH+L A +T N
Sbjct: 73 TTLPNGIKIASETSVSPAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTN 125
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 31.5 bits (68), Expect = 0.21
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 199 SVLPNKTFVAALNNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKN 357
+ LPN +A+ + P V + GS YE + G SH+L A +T N
Sbjct: 125 TTLPNGIKIASETSPIPAVSVGLYIDCGSVYETSSSSGTSHLLERMAFKSTTN 177
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 100 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALNN 240
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L++
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
>04_03_0910 + 20751014-20753437
Length = 807
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 205 LPNKTFVAALNNGSPVTRVT 264
+PNKT V N GSPVT T
Sbjct: 75 VPNKTHVWIANRGSPVTDAT 94
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 199 SVLPNKTFVAALNNGSPVTRVTIAFKAGSRYEPQAELGLSHVL 327
+ LPN VA+ + P V + +GS YE G+SH+L
Sbjct: 67 TTLPNGVRVASEDLPGPSACVGVFVDSGSVYETAETAGVSHLL 109
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 195 LDPNIFLYCRRSLGVAPDRNMTNKGGDESFG 103
L+PN+ +YC+ + + P K D++FG
Sbjct: 482 LEPNLPVYCQFNEELPPSNEQFAKDADDAFG 512
>03_05_0935 -
28948368-28948769,28949028-28949120,28949240-28949329,
28949413-28949477,28950442-28950512,28950610-28950648,
28950832-28951250
Length = 392
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 160 AAPAVKKDVRIQSSVLPNKTFVAALNNGSPVTRVTIAFKA 279
A P +K + + + P F A+ NG PV+R A KA
Sbjct: 254 AHPIIKVMAPVFALIAPRYQFTASHRNGPPVSRDPEALKA 293
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 199 SVLPNKTFVAALNN-GSPVTRVTIAFKAGSRYEPQAELGLSH 321
+ LPN VA ++ S V + AGSRYE + G++H
Sbjct: 102 TTLPNGLRVATESSLASRTATVGVWIDAGSRYETEDSAGVAH 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,566,596
Number of Sequences: 37544
Number of extensions: 176194
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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