Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32645
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   2.0  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    27   2.0  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.0  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   2.0  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.0  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   3.5  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    25   8.1  

>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 272 NKFY-RFMKSHLLNLVKGFFKCLIRVLF 352
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 209 PREISSQQFICISNNL*ISNTNKFYRFMKSHLLNLVKGFFKCLI 340
           PREI        SNN  +    +FY+  K HL++ V+   KC++
Sbjct: 160 PREIIFTSGATESNNAILKGVARFYKSRKKHLVS-VQTEHKCVL 202


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 272 NKFY-RFMKSHLLNLVKGFFKCLIRVLF 352
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 272 NKFY-RFMKSHLLNLVKGFFKCLIRVLF 352
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 272 NKFY-RFMKSHLLNLVKGFFKCLIRVLF 352
           NKF+ RF+++H +N ++ F K  + +LF
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILF 109


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 483 YIYISQIYCKFIRVVFTNDIIIYI 412
           YI+   IY  FI ++FT  ++IYI
Sbjct: 328 YIFNKPIYIAFIILLFTLQLLIYI 351


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 386 SYSKEFSIKIDRTKHELNI*KNPSLNLKD 300
           SYS E ++K +  KH+  + KN   N KD
Sbjct: 145 SYSVEATLKNEILKHQAYVSKNHEANEKD 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,593
Number of Sequences: 5004
Number of extensions: 46137
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)