Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32645
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619...    28   6.3  

>08_02_0199 -
           14160881-14161054,14161151-14161306,14161802-14161921,
           14162046-14162143,14162969-14163041,14164472-14164619,
           14165108-14165232,14165611-14165652,14165757-14166074,
           14166633-14167559,14167584-14167852,14167946-14168255,
           14169281-14169465,14170795-14170901,14171320-14171486
          Length = 1072

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 344 HELNI*KNPSLNLKDDFS*TDK 279
           H  NI +NPS ++ DDF+ TDK
Sbjct: 271 HVKNISENPSASVHDDFTVTDK 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,326
Number of Sequences: 37544
Number of extensions: 243280
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)