Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32640
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 207 7e-55
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 207 7e-55
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 1.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 2.5
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 3.3
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 5.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 5.8
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 7.6
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 207 bits (506), Expect = 7e-55
Identities = 91/150 (60%), Positives = 119/150 (79%)
Frame = +1
Query: 70 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLXGRPCKIVEMSTSKTGKHGHAKVHL 249
M + E FE G++GAS TFPMQCSALRKNG V++ GRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 250 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 429
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 430 DLGTQLRTDFXSGXELLCTVLKSCGEECVI 519
+LG ++ F G +L+ TV+ + GEE +
Sbjct: 120 ELGNEIEEGFEEGKDLIITVVSAMGEEIAL 149
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 207 bits (506), Expect = 7e-55
Identities = 91/150 (60%), Positives = 119/150 (79%)
Frame = +1
Query: 70 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLXGRPCKIVEMSTSKTGKHGHAKVHL 249
M + E FE G++GAS TFPMQCSALRKNG V++ GRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 250 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 429
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 430 DLGTQLRTDFXSGXELLCTVLKSCGEECVI 519
+LG ++ F G +L+ TV+ + GEE +
Sbjct: 120 ELGNEIEEGFDEGRDLIITVVSAMGEETAL 149
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 162 FRYAEXSSMQDC*NVHIQNRKARPR*SSLGWD 257
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 307 NMDVPHVKREDYQLTDISDDGYL 375
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 223 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 342
K A L+ D F+G ++ IC S N+ + V ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 214 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 339
K G+H A +++ + N K +D CPST D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 442 QLRTDFXSGXELLCTVLKSCG 504
QL+ F E LCT+L SCG
Sbjct: 522 QLQNGFIPTCERLCTILLSCG 542
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 130 PMQCSALRKNGFVMLXGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 282
P +CS ++ + C V G+ H H++G+D+ NG Y
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 325 VKREDYQLTDISDDGYL 375
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 306 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 217
+CG T +FI E+I+P V VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,558
Number of Sequences: 5004
Number of extensions: 47018
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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