Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32640
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   194   3e-50
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   186   7e-48
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    30   0.99 
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    30   0.99 
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    30   0.99 
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    30   0.99 
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   1.7  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   3.0  
L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   7.0  
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    27   9.2  
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  194 bits (474), Expect = 3e-50
 Identities = 94/154 (61%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
 Frame = +1

Query: 82  EDTHFETGDSGASATFPMQCSALRKNGFVMLXGRPCKIVEMSTSKTGKHGHAKVHLVGID 261
           +D HF TGDSGA+ATFP QCSALRKN  VM+ GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 262 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 438
           IF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG
Sbjct: 67  IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125

Query: 439 TQLRTDFXSG-XELLCTVLKSCGEECVIXXKANT 537
            Q+R  +      +L  V+ + GEE ++  K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  186 bits (454), Expect = 7e-48
 Identities = 89/154 (57%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
 Frame = +1

Query: 82  EDTHFETGDSGASATFPMQCSALRKNGFVMLXGRPCKIVEMSTSKTGKHGHAKVHLVGID 261
           ++  F++ +SGA+ATFP QCSALRKN  VM+ GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 262 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 438
           IF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159

Query: 439 TQLRTDFXSG-XELLCTVLKSCGEECVIXXKANT 537
             +R         +L  V+ +CGEE ++  K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 47  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 163
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 47  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 163
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 47  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 163
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 47  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 163
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 77  TSKTHTSRPETPGPQPPSPCNVRP 148
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 262 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 417
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical
           protein K02D10.1a protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = +1

Query: 1   PRAEFGTRRSHIIPDRC*IQNTTMGDIEDTHFETGD-SGASATFPMQCSALRKNGFVMLX 177
           P A+F  RR+H+ P R        GD  DT    G+ +G  +  P+QC    +N      
Sbjct: 226 PMADFLLRRAHVDPKR----TVMFGDRLDTDIMFGNANGQLSATPIQCQNESENSEPQKQ 281

Query: 178 G---RPCKIVEMSTSKTGKHGHAKV 243
           G   R  K   M  S   K  H+ +
Sbjct: 282 GWISRLLKGQSMDPSSWQKQSHSSL 306


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 164 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 72
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 91  HFETGDSGASATFPMQCSALRKNGFVMLXGRPCKIVEMSTSKTGKHGHAKV 243
           H ET DSGA A   +   A   +GF  +   P  ++   +S + + G  +V
Sbjct: 86  HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = -3

Query: 429 TIRDFEVLTQVTIVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPN 250
           T  D   LTQV +  H GQ+ ++  I++   + L  G V     G D++    IE++   
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-G 194

Query: 249 QVNFSVAVLSGFGCGHFN 196
           +V  +V   +G  C   N
Sbjct: 195 KVELTVEP-AGIHCAPAN 211


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 274 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 444
           KK +      H  + P  + E  QL D  +DG   L    +D+ DLR+D    D D G  
Sbjct: 45  KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103

Query: 445 L 447
           L
Sbjct: 104 L 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,258,623
Number of Sequences: 27780
Number of extensions: 287815
Number of successful extensions: 891
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)