Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32633
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.42 
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   5.2  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    24   6.9  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    24   9.1  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    24   9.1  

>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 165 RFKVSTYCSIFFFCNDMNLKYLCLYPLLMHILERNCNGNCIRK 37
           RFK+  +CS         + Y CL  +  H L +N   NC+ +
Sbjct: 447 RFKIPKFCSSNLILTSA-IYYSCLILIHRHSLTKNLQVNCVHR 488


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 30  MIIYECNCHYNSFQVCA*ARDISKGTLN 113
           + ++   CH N+F V    R+ S+G +N
Sbjct: 211 VFVFGFTCHQNAFSVINEVRNFSQGFVN 238


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 107 FKFMSLQKKKIEQ*VLTLKRNKTHLISF 190
           FK      +K E+ +  L+RNK+ LIS+
Sbjct: 274 FKLFVANPEKSEEVIEILRRNKSKLISY 301


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 231 YXNKLRICHETITQNEIRCVLFRFKVSTYCS 139
           Y N+L++C ET+    +     R K+  Y S
Sbjct: 213 YVNELKVCLETVIDQRLYTAQERSKMFEYFS 243


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 141 SIFFFCNDMNLKYLCLYPLLMHILERNCNGNCI 43
           S  + CN  + K +CL    + ++ +  NG C+
Sbjct: 587 SYLYSCNP-DAKTICLIERYIRLISQRANGQCL 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,828
Number of Sequences: 5004
Number of extensions: 26939
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)