Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32633
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    29   1.1  
Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    28   2.5  
Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    26   7.8  

>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 198 ITQNEIRCVLFRFKVSTYCSIFFFCN 121
           +T + I C++F + +  Y  I++FCN
Sbjct: 125 VTNSVILCLIFGYAIFQYSFIYYFCN 150


>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 65  LSSMCISKGYKQRYFKFMSLQKKKIEQ*VLTLKRNKTHLISFC 193
           L + C  K   ++++ F S Q KK+ + + T+   K + +++C
Sbjct: 15  LFNECSQKSKYRKFYNFYSAQFKKLSENLKTVDLPKNYTVTYC 57


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 231 YXNKLRICHETITQNEIRCVLFRFKVSTYCSI 136
           +  +++I    +T++E+ C+LF F ++  CSI
Sbjct: 129 FSTRVQIASFVMTEDEVMCMLFIFFLTLMCSI 160


>Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  HLRMQLPLQFLSSMCISKGYKQRYFKFMS 121
           HLR  LP+    S  IS  YKQ Y+ F S
Sbjct: 416 HLR-NLPINMTYSKLISDCYKQSYYAFHS 443


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 268 RVVHCGTKDRNIQRTMTIETIKL 336
           R+VHC T+  +  + M  ET+K+
Sbjct: 702 RIVHCSTQGTSFTQLMVAETMKI 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,321,716
Number of Sequences: 27780
Number of extensions: 154096
Number of successful extensions: 322
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)