Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32626
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   2.9  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    25   5.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.0  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   8.8  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   8.8  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 354 FVCSRLSTPDLSHCLCMENKPGIFM 428
           F  S+L  PDL+H   + N  G+F+
Sbjct: 191 FAQSKLEDPDLAHSQAISNSLGLFL 215


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 267 KIILXFYFYRVISVERCNRS 326
           +I    YFY ++  E+CNRS
Sbjct: 167 QIAAKLYFYYILFFEKCNRS 186


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 10   NADRKNFIKIWFL*YDETYXNXIKHSVLCHQVQ 108
            N  R  F K WFL Y            LCH+++
Sbjct: 1728 NKSRNVFCKEWFLRYPSQITLLSLRCTLCHEIE 1760


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 10  NADRKNFIKIWFL*YDETYXNXIKHSVLCHQV 105
           +AD    IK+W L     + + +KHS + + +
Sbjct: 546 SADESGIIKVWDLRSSNQHVSFVKHSSIVYSL 577


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 207 IFXFFLHIHPHTLI 248
           +F F LH+HP TLI
Sbjct: 773 LFNFTLHLHPGTLI 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,311
Number of Sequences: 5004
Number of extensions: 36437
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)