Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32624
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   0.88 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   1.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   2.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   2.7  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   3.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   4.7  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.2  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 250 SYSQIGYGSNYAPPRRPLKPTRG 318
           SYSQ  Y     PP+ P  P+RG
Sbjct: 96  SYSQPSYSQPSQPPKEPALPSRG 118


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  LPDDIRELLRAKNASIRAYDRY 111
           LP D+R+++   N+ IR YD Y
Sbjct: 619 LPLDVRQIIGLANSIIRGYDNY 640


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 31  LHRFKLPDDIRELLRAKNASIRAYD 105
           L+RF  P DIR L R  N S R  D
Sbjct: 809 LNRFNRPPDIRRLKRLVNFSFRTQD 833


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 253 YSQIGYGSNYAPPRRPLKPTRG 318
           YS+ GY     PPR  L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 116 PRENRIRMRA--LQRDVKSRITEVRDARWSDFLEGLAPS 226
           PRE+R   +   LQ   +SR +  RD+RW     G AP+
Sbjct: 40  PRESRYYRKEEHLQERSRSR-SPARDSRWKSSSSGFAPA 77


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 302 SSRLAAFDDDEKAELLAD 355
           S +LA+FDDDE+A +  D
Sbjct: 450 SEKLASFDDDEEARVSRD 467


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 284  PPLVGPSSRLAAFDDDEKAELLADTLQTQCTPSTQ 388
            PP V  +++L    ++ K + L D LQ    P+T+
Sbjct: 1944 PPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTR 1978


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +2

Query: 161 KSRITEVRDARWSDFLEGL-APSQRSYYRLARTL--KSDTVVTMPPLVGPSSRLAAFDDD 331
           + ++   R+     F E L +   RSY +L      KSDT++T   L   S       DD
Sbjct: 312 EEKVPRFRNPSKKAFYEKLHSLRNRSYSKLESLTSEKSDTLITKSELANESEEDDFIVDD 371

Query: 332 EKAELL 349
           E  E++
Sbjct: 372 EDTEVM 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,434
Number of Sequences: 5004
Number of extensions: 29363
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)