Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32624
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    27   4.1  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 74  ELRTPRSVRTIGILPRENRIRMRALQRDVKSRITEVRD 187
           +L  P+S    G+LPRE R ++   +RDVKS +   R+
Sbjct: 866 QLSVPQSTDIEGVLPREIR-KLVECRRDVKSLMKSERN 902


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 167 RITEVRDARWSDFLEGLAPSQRSYYRLARTLKSD 268
           + T++RD   +DFL G+   +  Y ++  T+K D
Sbjct: 612 KATKLRDFNHNDFLWGMRARKEIYDKIINTIKLD 645


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 YYRLARTLKSDTVVTMPPLVGPSSRLAAFDDDEKAELLADTLQTQCTPSTQSV 394
           + RL+ + ++ T  TM P+V    RL+         LL+       +PST S+
Sbjct: 178 FRRLSTSSEASTSATMNPIVNSVRRLSTTHRQSSPSLLSLCSVISRSPSTSSI 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,074,395
Number of Sequences: 27780
Number of extensions: 168413
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)