Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32614
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.32
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 28 0.99
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 27 2.3
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 27 3.0
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 5.3
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 5.3
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 26 5.3
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 26 5.3
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 7.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.0
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 9.2
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.32
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 363 DYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDT 542
D+ DII + + L F+L+Q +T + L P I H ++ ++ ++E +T
Sbjct: 1382 DHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSE-NT 1440
Query: 543 PGEINYKYVLEHL 581
P +N+ ++HL
Sbjct: 1441 PLILNFMVAIQHL 1453
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 28.3 bits (60), Expect = 0.99
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 293 KRREYPRTNRTNQPVFYAQIFLE*LWKSCGHY*TY*QSKFEIDV 424
K Y + R Q V ++ LWK+ GH+ Y ++ F D+
Sbjct: 326 KYMRYQYSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFSFDI 369
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 258 TSPNVSELDFPLYQPLCEFFSHPRPSHIRLSY 163
T PN LDF LC +PR +H+R+ Y
Sbjct: 235 TIPNA--LDFLFMPSLCYQLYYPRTAHVRIHY 264
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 322 SISPWIFSPF-RTSTAYSKFFSNVSQCFGVGFSTLPAIM 209
++ P SP+ +S AY K + FG G S PA+M
Sbjct: 492 TLEPSPVSPYDESSDAYKKLAGAIRYTFGDGTSVTPALM 530
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 153 TNLNTTIEYAKALDAKKIHIMAGKV 227
T+LNT+I++ + + A IH+ KV
Sbjct: 179 TDLNTSIKFTENISANAIHVNQDKV 203
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 372 RAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 494
R + I++ I PN+ ++ FH + D TH + LL Y+
Sbjct: 65 RELQIMRAISHPNIIKLIAFFHTHNPSKDETH-LCLLLEYM 104
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 287 VDSI*QIFLKRL---PMFRSWIFHFTSHYVNFFRIQGLRIFDC 168
++S+ +FL +F+ +I SH+ +F RI+ LR ++C
Sbjct: 48 IESVKDVFLVGFYDESVFKDFINEVASHFPSFNRIKYLREYNC 90
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 357 LSDYGRAVD-IIKRIDSPNLRLMLDIFHLQQIAGDITHNI 473
+SD+ +D +KRI P +R LD HL+ IA T I
Sbjct: 96 MSDFAIGLDPSLKRI-LPEIRFRLDFQHLKSIAKGATSTI 134
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 252 ETFEKNLLYAVDVLKGENI 308
E FEKN+L +V+ + GEN+
Sbjct: 220 EKFEKNILASVNAVFGENL 238
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 227 HFTSHYVNFFRIQGLRIFDC 168
H+TSH VN + ++FDC
Sbjct: 704 HYTSHLVNTIMRKVSKVFDC 723
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 179 IFDCRIQICFKFVFFTRNRSYANFTFGRVS 90
I C + + +F+T+N +Y F +VS
Sbjct: 179 IIGCGVNFINRTIFYTKNGAYLGVAFKKVS 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,514
Number of Sequences: 5004
Number of extensions: 59756
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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