Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32614
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107... 33 0.19
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 33 0.19
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 1.0
07_03_1344 - 25912639-25914060 28 5.4
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 28 7.2
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 28 7.2
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 27 9.5
04_04_0636 + 26804533-26805036 27 9.5
04_02_0006 + 8455219-8457469,8457560-8457924 27 9.5
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427... 27 9.5
>12_01_0138 -
1069616-1069894,1070056-1070607,1070689-1071046,
1071214-1071503,1072257-1072360,1072419-1072575,
1073229-1073273,1073636-1073692
Length = 613
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 111 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 275
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 271 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 323
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 111 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 275
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 334 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 386
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 276 IANFSQTSPNVSELDFPLYQPLCEFFSHPRPSH 178
++ +SQTSPN S P Y P +S P PS+
Sbjct: 1766 LSPYSQTSPNYSPTS-PTYSPTSPSYSQPSPSY 1797
>07_03_1344 - 25912639-25914060
Length = 473
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 33 VRNAKQSAGLQQIAINLKTGDTTKGEVGV 119
VR ++A + Q ++ L TG+T GE+GV
Sbjct: 263 VRLNSRAAAIGQSSVTLDTGETVSGELGV 291
>04_03_0199 -
12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 432 FHLQQIAGDITHN-ITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSG 593
FHL + +TH + L H+Q+ + + P P +IN L HLA+ G
Sbjct: 537 FHL--LLERVTHEALPHALSKCYHLQVLDIGSYGSPLIPDDINNLVSLRHLAQKG 589
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 479 FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHS-SSIITQEIFGHRILVDW 324
F I SN + + N ++++ +WT N VH+ S++T + G +L D+
Sbjct: 53 FLTIYSNAFAFSIWYTNSKNKTVVWTANRGRPVHARRSVVTLQKDGAMVLKDY 105
>06_01_0329 +
2383305-2384057,2385423-2385469,2386383-2386815,
2386852-2387034,2388388-2389044
Length = 690
Score = 27.5 bits (58), Expect = 9.5
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = +3
Query: 438 LQQIAGDITHNITKLLPYIGHVQIAQVP 521
++++AGD+ HN+ + + +++ Q+P
Sbjct: 130 MRRLAGDVEHNVEAFMELVPELEVEQLP 157
>04_04_0636 + 26804533-26805036
Length = 167
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 266 KFAICCRRPKRREYPRTNRTN 328
++A+CCRR +RR Y R T+
Sbjct: 20 RWALCCRRRRRRGYLRLQTTS 40
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 275 ICCRRPKRREYPRT---NRTNQPVFYAQIFLE*LWKSCGH 385
+C PKRRE P T N T + V Y I W S H
Sbjct: 533 LCSSNPKRREVPTTPINNETLKKVSYGDILKATNWFSSVH 572
>03_05_0229 -
22142255-22142344,22142471-22142527,22142621-22142705,
22143552-22143677,22143750-22143793,22143877-22143999,
22144078-22144216,22148795-22151292
Length = 1053
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 263 LKRLPMFRSWIFHFTSHYVNFFRIQGLRIFDC 168
L+ L + RSWI + + +Q LR+ DC
Sbjct: 517 LRYLDLSRSWITSLPEDFFMIYNLQTLRLSDC 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,939
Number of Sequences: 37544
Number of extensions: 340611
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -