Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32610
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 101 1e-22
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 73 3e-14
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 66 3e-12
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 58 8e-10
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 54 2e-08
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 29 0.76
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.0
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 27 1.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 3.1
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.0
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 26 4.0
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 26 4.0
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 26 4.0
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 9.3
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 25 9.3
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 9.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 9.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.3
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 101 bits (241), Expect = 1e-22
Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 5/177 (2%)
Frame = +2
Query: 80 PLPKIENDDDVIVKVEYSGICGTDLHIVQ----GEFPASKERPLPLGHEFSGTITDVGKK 247
P + +D V V ++ +GICG+D+H + G+F K P+ LGHE +G + +VGK
Sbjct: 22 PGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKK--PMILGHESAGVVVEVGKG 79
Query: 248 -SVFRKGQKVVVDPNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDGGWAQYVKVPQDQV 424
S + G V V+P C LCD+CR G+Y C +T DG Y +D
Sbjct: 80 VSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPY--DGTLRTYYITTEDFC 137
Query: 425 YLLPDGVSTEQGGLCEPYSCVAHGYDRASPLLVGEKILIVGAGIIGNLWVTCLHQLG 595
LP +S E+G L EP S H R + L G ++L++G G +G L + G
Sbjct: 138 TKLPKQISVEEGALFEPMSVAVHAMTRGN-LKCGSRVLVMGCGTVGLLMMAVAKAYG 193
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 73.3 bits (172), Expect = 3e-14
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Frame = +2
Query: 104 DDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGKKSVFRK-GQKVVV 280
D+V+V ++Y+G+C TDLH +QG++P + PL GHE +G + VG K G +V V
Sbjct: 34 DEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGV 93
Query: 281 D-PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDGGWAQYVKVPQDQVYLLPDGVSTEQ 457
N +C C++C K + C ++ G DG + Y ++P+ V E
Sbjct: 94 KWMNSSCGNCEYCMKAEETICPHIQLS---GYTVDGTFQHYCIANATHATIIPESVPLEV 150
Query: 458 GG--LCEPYSCVAHGYDRASPLLVGEKILIVGAG 553
+C +C + + S + GE I I GAG
Sbjct: 151 AAPIMCAGITC--YRALKESKVGPGEWICIPGAG 182
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 66.5 bits (155), Expect = 3e-12
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Frame = +2
Query: 23 MEAVVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGIC-GTDLHIVQGEFPASKERPL 199
M+A V+DG L +K + P P I + DVIVK IC G+D HI GE P ++ +
Sbjct: 37 MKACVWDGP-LNVKIA-EVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94
Query: 200 PLGHEFSGTITDVGKK-SVFRKGQKVVVDPNRACSLCDFCRKGKYQYCLTAG------IN 358
LGHE G + + G + + G +VV+ + AC C FC++ +Y C T +N
Sbjct: 95 -LGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDVN 153
Query: 359 ------STVGIWR-----DGGWAQYVKVPQDQVYL--LPDGVSTEQGGLCEPYSCVAHGY 499
+ G + G A+Y++VP ++ LPD + +G C +
Sbjct: 154 YGSHHSAIFGYTKLLGDVPGCQAEYIRVPFAEINCCKLPDDIPDSEGLFMSDVLCTSLHA 213
Query: 500 DRASPLLVGEKILIVGAGIIG 562
+ G+ + I G G IG
Sbjct: 214 CTLGEVKKGDTVAIWGMGPIG 234
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 58.4 bits (135), Expect = 8e-10
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Frame = +2
Query: 38 FDGKTLTLK----YDNKYPLPKIENDD-------DVIVKVEYSGICGTDLHIVQGEFPAS 184
F+GKT+T K + K PL IE+ +V VKV++S +C TD + + G P
Sbjct: 3 FEGKTITCKAAVAWGAKEPL-SIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEG 61
Query: 185 KERPLPLGHEFSGTITDVGKKSV-FRKGQKVVVDPNRACSLCDFCRKGKYQYCLTAGINS 361
P+ LGHE +G + +G+ + R G V++ C C FCR GK C
Sbjct: 62 AF-PIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQ 120
Query: 362 TVGIWRDG 385
G+ DG
Sbjct: 121 GRGLMPDG 128
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 53.6 bits (123), Expect = 2e-08
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 107 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGKK-SVFRKGQKVVVD 283
+V +K+ SG+C TD + + G+ P P+ LGHE +G + VG + + + G V+
Sbjct: 39 EVRIKIVNSGVCHTDAYTLSGKDPEGL-FPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97
Query: 284 PNRACSLCDFCRKGKYQYCLTAGINSTVGIWRDG 385
C C FC+ GK C G+ DG
Sbjct: 98 YTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDG 131
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 170 EFPASKERPLPLGHEFSGTITDVGKKSVFRKGQKVVVDPNRACSLC 307
EF + KE+ + L + TIT++ + ++ G +VD NR +LC
Sbjct: 172 EFESQKEKLVYLSADSDNTITELDEDKIYIIG--AIVDKNRYKNLC 215
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 32 VVFDGKTLTLKYDNKYPLPKIENDDDVIVKVEYSGICGTD 151
V++ T KYD K LP+ +D V ++Y G +D
Sbjct: 208 VIYPDWNFTNKYDPKCELPRFWGEDGAPVVIDYVGCYDSD 247
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 154 THCTG*VSGFQRAPPTAWSRIQWHHYG 234
T+ T SGF+ APP AW H YG
Sbjct: 652 TNVTRKFSGFESAPPAAWYLQFSHLYG 678
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 2 PHKEKFKMEAVVFDGKTLTLKYDNKYPLPKIENDDDV---IVKVEYSGICGTDLHIVQ 166
PH ++ V TL +K+D + L +EN++ V ++K + DL+I++
Sbjct: 413 PHSDQSLQNKVFELHSTLAIKFDELFRLLNLENEESVEWRLIKKVFEYRLNLDLYILK 470
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/81 (24%), Positives = 32/81 (39%)
Frame = +2
Query: 65 YDNKYPLPKIENDDDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK 244
Y N P KIEN + + + DL + + L + EFS + D+
Sbjct: 827 YQNDVPHEKIENALRKVAMIVSQVVNDEDLSNKELLYDFFNNHILGILAEFSNILNDLKG 886
Query: 245 KSVFRKGQKVVVDPNRACSLC 307
K+ + K +V + SLC
Sbjct: 887 KTSINEKIKTIVGIEKMLSLC 907
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -3
Query: 235 IRNGATEFVTKR*GALFGSRKLTLYNV*ISPTYPGVLHFHNDVIVVFYLRQWILVIVF*C 56
I+NG F + ++GS L +S V N+V+ FYL Q + V+++ C
Sbjct: 163 IQNGLDTFTIAKLRQVYGSNSL------VSTKKSIVTILLNEVLHPFYLFQAVSVLIWLC 216
Query: 55 QSF 47
SF
Sbjct: 217 DSF 219
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 486 WRTATIALPLYLSERKSSSSE-PELLVTCGSR 578
W TA IAL Y E S+ E +LLV C S+
Sbjct: 1287 WNTALIALMTYYREAAISTPELLDLLVKCESK 1318
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 359 STVGIWRDGGWAQYVKVPQDQVYLLPDGVS-TEQGGLCEPYSCVAHGYDRASPLLVGEKI 535
S + +DG A+Y +P+ +P +S TE + P++ R + +
Sbjct: 94 SELSFTKDGTHAEYCIIPEKAAVRMPSNLSFTEAASVGVPFTTAYLALSRGE-TKGSDIV 152
Query: 536 LIVGA-GIIGN 565
L+VGA G +G+
Sbjct: 153 LVVGALGAVGS 163
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 313 EITEAAGSVRIHDDLLTFPE 254
EI EAA +IHD + +FPE
Sbjct: 548 EIVEAAKKAKIHDIIESFPE 567
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 464 LCEPYSCVAHGYDRASPLLVGEKILIVGAGIIGNLWVTCLHQLGHRRRDRFRDE*K 631
+CEP D P+ G++ LI+G G + L H+R + DE K
Sbjct: 170 VCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHKRWNNSSDESK 225
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 382 VPPDPDGTVNTGGQAVLVFSFTTEITEAAGSVRIHDDLLTFP 257
+PP V+ G +V S+ + +E+ + H +L T P
Sbjct: 605 LPPGAMANVSAGPSSVRSSSYNSTASESKSEITSHQNLHTIP 646
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 138 YVGLIYTLYRVSFRLPKSAPYRLVTNSVAPLRMLG 242
Y+ ++ T Y+ SFR ++ Y L NSV +R LG
Sbjct: 225 YLSVLPTSYKSSFRSFETNQYSLTENSV--VRQLG 257
>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 518 VEGKRDRSRAPRKSMARIGHL 456
+EG+ +RSR PR+SM+ HL
Sbjct: 82 IEGEDERSRFPRRSMSE-NHL 101
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 405 FTYWAQPPSRQIPTVLLIPAVKQYWYFPLRQKSQRLQA 292
FT + S+Q+ TVLL + +Y+ +RQ++ R A
Sbjct: 743 FTSESFTVSQQVSTVLLRTLLDNRYYYGIRQEAARALA 780
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 383 GGWAQYVKVPQDQVYLLPDGVSTEQ 457
GG+ YV+ Q Q+Y GVS +Q
Sbjct: 506 GGYNAYVQYYQQQIYAQMHGVSGDQ 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,591
Number of Sequences: 5004
Number of extensions: 64377
Number of successful extensions: 211
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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