Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32603
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    78   4e-15
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical ...    27   6.9  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    27   9.1  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    27   9.1  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    27   9.1  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    27   9.1  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 47/116 (40%), Positives = 61/116 (52%)
 Frame = +3

Query: 42  MASQTQGIQQLLXAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 221
           MASQTQGIQQLL AEKRAAEK++                   EV                
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60

Query: 222 KHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 389
           +++GT+E + +KI  +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 61  QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 160 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 270
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


>AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical
           protein W03G9.5 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +1

Query: 43  WRVRPKESNSFXLLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKP 222
           W+ + +E+N   LLKNA   ++AR+  E            K KL+ST  S   S+K+ + 
Sbjct: 419 WKKKEEEANKEKLLKNA---RAARRAKEDFIV-PEDNTVQKRKLESTQLSSAVSTKSTRS 474

Query: 223 STWVPGKVLRPRS 261
              +  K+L P+S
Sbjct: 475 ---IGKKILPPKS 484


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 433 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 311
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 433 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 311
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 433 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 311
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 433 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 311
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 97  IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 137


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 535 VGSKKTCRLHTLVTMICQINIQFIFLNKSDQIKLVRRKL 419
           + S +TC L T   +I  +    IFL  SD +K ++ KL
Sbjct: 389 LSSLETCFLKTTKPVISTLFYTIIFLQYSDTVKTLQTKL 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,910,961
Number of Sequences: 27780
Number of extensions: 190760
Number of successful extensions: 556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)