Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32587
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 52 3e-08
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 42 5e-05
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 41 7e-05
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 40 2e-04
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.14
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 30 0.18
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 29 0.24
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.31
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 0.72
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 27 0.96
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.96
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 27 1.7
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 2.2
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 2.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 26 2.9
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 3.9
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 5.1
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 5.1
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 5.1
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 5.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 6.7
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 8.9
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 52.4 bits (120), Expect = 3e-08
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = -2
Query: 438 SKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVEL---VEPGTKTPLTTSKVNDIHENI 268
+K+ GE L+ L+ +HP+I DVRG GL+ G+E+ +P + + + D +
Sbjct: 338 AKISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIASCTDPSKPSDFLGTVIGDKCLEL 397
Query: 267 KDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 145
N ++ G VFRI PP+ +T +++ I I + A+
Sbjct: 398 GMNCNIVHLRG-IGGVFRIAPPLTVTDEEIHKAIEIFDSAL 437
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 41.5 bits (93), Expect = 5e-05
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Frame = -2
Query: 429 VGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELV-EPGTKTPLTTS-KVNDIHENIK-DN 259
+G+Y +L + HP +G++RG+GL G+E+V + TK KV + I ++
Sbjct: 349 MGKYLSEKLHETFDSHPNVGNIRGRGLFWGLEIVKDKATKECFPPEYKVGSLANKIGCEH 408
Query: 258 GVLIARG-----GRFNNVFRIKPPMCITKQDVDFGISIINDAIKKVV 133
GV + G G + + PP IT++ +D + ++ I V
Sbjct: 409 GVFVYPGMGTIDGTRGDHVLLAPPYIITREQIDELVEALSKTITSTV 455
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 41.1 bits (92), Expect = 7e-05
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Frame = -2
Query: 429 VGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVEL------VEPGTKTPLTTSKVNDIHEN 271
+G +L LQ + P V+ DVRG+G+++G+E V+ T VND+ +
Sbjct: 370 LGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIPESVQEEFGEYYATPIVNDLADT 429
Query: 270 IKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIKK 139
V + +VFR PP+ I + D+D G+S + A+ K
Sbjct: 430 YH---VQVYCSLNNPSVFRFLPPLTIPEADLDEGLSAVESAVAK 470
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 39.9 bits (89), Expect = 2e-04
Identities = 30/96 (31%), Positives = 52/96 (54%)
Frame = -2
Query: 432 VVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGV 253
V+GE F L++ + P++ VRG+GL+ V + E +KT T+ D+ ++ GV
Sbjct: 334 VLGEKFRTALIECKS--PIVQKVRGRGLLNAVVIDE--SKTNGRTAW--DLCLIMRSRGV 387
Query: 252 LIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 145
L N+ R PP+ IT++D+ GI +I ++
Sbjct: 388 LAK--PTHGNIIRFSPPLVITEEDLMKGIEVIKKSL 421
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.14
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 197 HIGGFILNT--LLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTS 370
H G F++N L P T ++ T EV++GV+ S +P+ PLT
Sbjct: 105 HYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTI 164
Query: 371 PITGC 385
GC
Sbjct: 165 VCDGC 169
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.18
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 194 MHIGGFILNTLLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRP-CPLTS 370
MHI +LN LK PP ++S S I S S T V + PG + S P+ P P++
Sbjct: 195 MHIINLLLNGSLKSPPVSISP--SFIASAAS-TSSVSAPSQYPGLSRSPPVQAPNIPVSD 251
Query: 371 P 373
P
Sbjct: 252 P 252
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 29.5 bits (63), Expect = 0.24
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -2
Query: 399 DLQKQHP-VIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNN 223
D ++P +I G+GL++G++ EP K E + G+L+ GG NN
Sbjct: 363 DFVAKYPNLIRGYAGRGLLLGLQFTEPPAK----------FIELARQQGLLLLPGG--NN 410
Query: 222 VFRIKPPMCITKQDVDFGISIINDAIK 142
R+ P + + + + G+ I+ +K
Sbjct: 411 NTRVLPSLNVKDEVIAKGLDIMESTLK 437
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 29.1 bits (62), Expect = 0.31
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 235 STTSDEHSVVFD---ILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLL 393
S S+E SV+FD +L I++ S +S F +HS HE PDIA + +L
Sbjct: 776 SPDSEEGSVLFDDGELLCGILDKSSFG---ASAFGLVHSVHELYGPDIAGRLLSVL 828
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.9 bits (59), Expect = 0.72
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = +1
Query: 139 FFDRIIDDRNAEVDV-----LFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 303
F DR++D+ NAEV + + W Y+ I+ + + +D L++ GS
Sbjct: 699 FTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758
Query: 304 QRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQLPDEVFADYLT 438
+R L S +D++ + + N +++ + ++ + +Y T
Sbjct: 759 RRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQT 803
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.5 bits (58), Expect = 0.96
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -3
Query: 290 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCIIEI 111
L I I + T C+ V +MY N CA L+ ST + M K+ CII +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 110 LARLKVFIFV 81
+ + V
Sbjct: 288 AISFSICVIV 297
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.5 bits (58), Expect = 0.96
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = -3
Query: 290 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCIIEI 111
L I I + T C+ V +MY N CA L+ ST + M K+ CII +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 110 LARLKVFIFV 81
+ + V
Sbjct: 288 AISFSICVIV 297
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 51 YSNNLKQCILYKNKNFQTGKDFYYTL 128
Y NL Q ++ K F +GK+ Y+TL
Sbjct: 352 YGVNLNQSVILKAIGFSSGKNEYHTL 377
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 235 STTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQL 408
S T+ +HS + + N G++ +SS + SD PD H L+ K +QL
Sbjct: 121 SVTAHDHSDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQL 178
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 175 VDVLFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDII 288
V +LF D W F++ + +ST++ E + D + ++
Sbjct: 195 VGILFEDDLWYFFNTLYMLSSTSAIEFAYFLDSIFTVV 232
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +1
Query: 109 RISIIHLVDNFFDRIIDDRNAEVDVLFSDAHWRFYSEYIIK 231
R+ ++ + N + R + D++ E F+D R+Y + +K
Sbjct: 451 RLQMVSKLSNTYFRCLHDKSVEYVCPFADVLGRWYEPWFVK 491
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +3
Query: 42 FPKYSNNLK---QCILY-KNKNFQTGKD 113
F S NL Q +LY KN+NFQTG +
Sbjct: 493 FDSLSRNLSLTVQTVLYLKNRNFQTGNE 520
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.0 bits (52), Expect = 5.1
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 251 SSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCIIEILARLKV 93
S L + A+ +Y E + C+++ + + ++RS L I+E+L K+
Sbjct: 1240 SLLCLGAIAIYDEDDAVCSAIEDSIAHLKKDEVLRSGALKQVQIMEVLLTKKI 1292
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 5.1
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 378 VIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNG-VLIARGGRFNNVFRIKPP 202
V+ + G+ + I E +K P T + + + + N VLIA FNN+F+ P
Sbjct: 659 VVKNDEGEPIEIIAEYDASSSKKPKTF--IQWVSRDKESNSPVLIAETRLFNNLFKCDNP 716
Query: 201 MCITKQDV 178
+ +Q++
Sbjct: 717 AALKEQEL 724
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 5.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 284 SLTLEVVSGVLVPGSTSSTPIMRPCPLTSPI 376
S T VS P STS PI P T P+
Sbjct: 631 SFTSYTVSATATPTSTSHIPIPTVLPPTQPV 661
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 5.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 260 LSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTSPITGCC 388
LSL IS+ + S VL GS + + + LTSPI C
Sbjct: 151 LSLELMRISIWIGNYSHVLAFGSRAKSTVSAAMELTSPIYAYC 193
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 339 VELVEPGTKTPLTTSKVND 283
+EL+ G TP+TT V+D
Sbjct: 1458 IELIPDGASTPVTTFNVSD 1476
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 109 LPV*KFLFLYNIHCFKLFEYL 47
+P+ KF YNIHC F+ L
Sbjct: 978 IPIIKFTGQYNIHCDLSFDNL 998
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,141
Number of Sequences: 5004
Number of extensions: 38527
Number of successful extensions: 123
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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