Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32586
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    29   0.44 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   5.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   5.4  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    24   9.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    24   9.5  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    24   9.5  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.5  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 174 FSTFPSDDELYCARFTITPLTP 109
           FSTF  DD  Y +RF+  P+ P
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMP 208


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 332 ATINYPFEKXPLSPRFTGEHALRRYPS 412
           +T  +P+ K     RF+  H+L R PS
Sbjct: 85  STSPFPYLKGSFDDRFSSTHSLTRQPS 111


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 149 SSSEGNVEKVYPQNIPGYKYVNAEEQ 226
           S+S  NV+++ PQN  G K  + EE+
Sbjct: 96  SNSLDNVQEINPQNTIGDKSAHTEEE 121


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 240 LKDMSCSSAFTYLYPGMFCG*TFSTFPSDDELYCARFTITPLT 112
           L D +C +  T  +P +      ST+ S   LY A  T+ P+T
Sbjct: 64  LADRACETMKTLRHPCIIK--YLSTYKSSTHLYIATETVRPVT 104


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 KYVNAEEQDMSFRAMSDRAA 262
           KYV + ++D+ + A+SD AA
Sbjct: 9   KYVESSDKDIRYMALSDLAA 28


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 172 EGLPTEHTWI*ICKCRGTRHVFQGYVR*SSSHNVLD 279
           E  P E  W+   K RG     + Y+R   + NV+D
Sbjct: 441 EEKPPEEKWVPKAKARGKNSALRRYLR-KHARNVVD 475


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +2

Query: 122 VIVKRAQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAHT 268
           ++  +AQ++ + E        + I GY   + +E  MS    ++ +A T
Sbjct: 385 LVESQAQFTKNREATATPTEEEQIEGYDQEHTDELGMSRANTTEESAET 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,292
Number of Sequences: 5004
Number of extensions: 36113
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)