Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32586
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797...    85   3e-17
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372...    32   0.25 
12_02_0289 - 16914975-16916238,16916246-16916484                       28   4.0  
11_02_0137 - 8702661-8703495,8703820-8704628                           28   4.0  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    28   4.0  
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63...    27   7.1  

>03_06_0128 -
           31879286-31879381,31879463-31879574,31879680-31879747,
           31880959-31881072,31881207-31881247,31881340-31881393,
           31881785-31881866,31882063-31882116
          Length = 206

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +2

Query: 338 INYPFEKXPLSPRFTGEHALRRYPSGEERCIACKLCEAI 454
           INYPFEK PLSPRF GEHALRRYP+GEERCIACKLCEAI
Sbjct: 78  INYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAI 116


>03_06_0371 +
           33435936-33436472,33436554-33436741,33437146-33437245,
           33437360-33437545,33438977-33439186,33439772-33439959,
           33440083-33440341
          Length = 555

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 137 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAHTMFWT-ELXRGFAVTLA 313
           A Y S  + N+   YP++ P YK +   ++   F  + D + +T+F   +L  G+ V + 
Sbjct: 189 ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYFPDLDDPSFNTVFGVRDLFYGYDVLVE 248

Query: 314 HIFKEPATINY 346
           ++  +PA + Y
Sbjct: 249 NLM-DPAHVPY 258


>12_02_0289 - 16914975-16916238,16916246-16916484
          Length = 500

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 329 PATINY--PFEKXPLSPRFTGEHALRRYPS-GEERCIACKL 442
           P  ++Y  P+E+  +S     EHA+RR+    E+R + CKL
Sbjct: 42  PMAMSYFNPYEQITVSEYIATEHAVRRHLCLPEKRVLGCKL 82


>11_02_0137 - 8702661-8703495,8703820-8704628
          Length = 547

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 235 RHVLFLCIYIFISRYVLW 182
           RH+L LCI +F++ Y  W
Sbjct: 120 RHLLNLCIQVFLALYAFW 137


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 137 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAHTMFW 277
           +Q   + + N+E++ P+     + V AEE+D   RA + +A   M W
Sbjct: 156 SQVDGTYQFNLEELVPKLCELAQIVKAEEKDNMLRASTLQALSAMIW 202


>08_01_0087 +
           630355-630403,630502-630699,631858-631943,632238-632946,
           633029-633194,633459-633934,634023-634873,635078-635987,
           636597-636784
          Length = 1210

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 209 HIYIQVCSVGKPSQHFLLMMS 147
           H+Y++    G P  HFLL+MS
Sbjct: 737 HVYVEFQKRGLPHAHFLLIMS 757


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,358,213
Number of Sequences: 37544
Number of extensions: 220912
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)