Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32586
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...   122   1e-28
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...   122   1e-28
AF036705-3|AAB95171.1|  556|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated io...    27   8.4  

>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score =  122 bits (294), Expect = 1e-28
 Identities = 58/91 (63%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
 Frame = +2

Query: 185 QNIPGYKYVNA-EEQDMSFRAMSDRAAHTMFWTELXRGFAVTLAHIFKEPATINYPFEKX 361
           Q    YK+V    E D +     +   H +F+TEL RGF V L H+F EPATINYPFEK 
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 362 PLSPRFTGEHALRRYPSGEERCIACKLCEAI 454
           PLS RF GEHALRRYPSGEERCIACKLCEAI
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAI 122


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score =  122 bits (294), Expect = 1e-28
 Identities = 58/91 (63%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
 Frame = +2

Query: 185 QNIPGYKYVNA-EEQDMSFRAMSDRAAHTMFWTELXRGFAVTLAHIFKEPATINYPFEKX 361
           Q    YK+V    E D +     +   H +F+TEL RGF V L H+F EPATINYPFEK 
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 362 PLSPRFTGEHALRRYPSGEERCIACKLCEAI 454
           PLS RF GEHALRRYPSGEERCIACKLCEAI
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAI 122


>AF036705-3|AAB95171.1|  556|Caenorhabditis elegans Hypothetical
           protein F37C4.5a protein.
          Length = 556

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 281 ELXRGFAVTLAHIFKEPATINYPFEKXPLSPRFTG 385
           EL R F V LAH + E    N PF+    S R +G
Sbjct: 31  ELKRTFQVELAHGYNEVKVQNLPFDLVQDSIRVSG 65


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -1

Query: 211 YIFISRYVLWVNLLNISF***AVLCPFHYHTTNSLMLVLVMRLKICFAKDIFSLN*VVSL 32
           ++F+  Y+ + + L + F    ++ PF + T NS +   +M LK+    D+ +   ++ L
Sbjct: 225 HMFLHNYIFFQSFLVVLFK--LIILPFCFETGNSSIEFFIMMLKVAIG-DVLTAPLIIQL 281


>U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated ion
           channel protein 3 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 231 MSCSSAFTYLYPGMF---CG*TFSTFPSDDELY 142
           +S +   TY YP ++   C    +TFP DD++Y
Sbjct: 173 VSYTGEVTYAYPAIYTVLCQIGIATFPFDDQVY 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,333
Number of Sequences: 27780
Number of extensions: 207547
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)