Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32585
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   2.6  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   4.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   4.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.9  

>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 531 PTKEFEPFAGSPPPPEDSFFYIRYPKSDILFGKPTNSQDAL 653
           PT    PF   PP P  +   +R P       K T+++DAL
Sbjct: 35  PTPNMSPFEQKPPLP--THMDVRRPSGPFRIVKATSTEDAL 73


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 688 PRQRSLPSFRSPSAS*LFVGLPNNIS 611
           P  +S+P FR P A   FVG P+ ++
Sbjct: 814 PNLQSVPFFRQPDAPKRFVGTPDYLA 839


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 403  SITSKLLDNSILNGIIILSRNDKIASSK 320
            SI  KLL N   N + +   NDK++SS+
Sbjct: 1253 SILKKLLQNEQFNVVFLHFGNDKVSSSR 1280


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -2

Query: 666 RFVPQARLDYSWVYQIIYPI*GSVCRRMNL 577
           ++V    +++ W+Y+I Y + GS   ++N+
Sbjct: 223 KYVDNTPVEFGWLYEISYQLEGSDNEQLNV 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,434
Number of Sequences: 5004
Number of extensions: 48794
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)