Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32582
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    33   0.043
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.8  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    27   2.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   6.5  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   6.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   8.6  

>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 359 KKNPSGSD-LDYVEVRKCLLS*R*LCQEKVDG*RA*QC*RCEKWPH 225
           KKN SGSD +D  E +K LL+    C +  +     QC RC+ W H
Sbjct: 316 KKNISGSDKVDKAEKKKALLNCE--CGDSTEDSEMFQCERCDGWVH 359


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 328 TWRSGNVSSLRDNFARKKLTDNGHSSVRGVRSGPILLKPRP 206
           +W S  +    D   +K LTDNG +S   ++SG   +  +P
Sbjct: 716 SWHSNMLKRQEDLRKKKPLTDNGATSRHMLKSGLTRVTSKP 756


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 113 GRAVTVTSER---YVAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQL 277
           G  VT+T E    +++++ E  +P+L +F G +  +  Q    +    +  MP+  Q+
Sbjct: 182 GVKVTLTGESMYTFLSILSELVLPQLHDFKGLSPTSGDQTGNISFGLPSEVMPLFPQI 239


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 210 VLALKPEKFCNSGMKNSSIIATYRSD 133
           ++ LKP KFCNS + +   +     D
Sbjct: 911 IIRLKPPKFCNSALIDPEFLKCLNED 936


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 148 GYDRRVFHTRIAKLFRL*CQDVVSTGW 228
           G+  R+FH  I +L    C DV++  W
Sbjct: 67  GFVNRIFHPNIDELSGSVCLDVINQTW 93


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 32  LHSPKVTVWAA--MSAHGILXPYF--FEDGRGRAVTVTSERYVAMIEEFFIPELQNF 190
           LH   +++W +  M  + +L   F  F    G +V +T E Y+ +    + P L +F
Sbjct: 232 LHDGSLSIWQSLVMILYYLLYVLFVFFSGSSGVSVVITDENYLPVSLPVYSPVLNSF 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,215
Number of Sequences: 5004
Number of extensions: 49329
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)