Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32582
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0657 - 21605598-21606199,21606524-21606641                       29   2.9  
01_07_0235 + 42198662-42199615,42200129-42200746                       28   6.7  

>12_02_0657 - 21605598-21606199,21606524-21606641
          Length = 239

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 76  WYPXALLL*GWQRARSYCYVGAIC 147
           WY   LL   W R R YC+V + C
Sbjct: 2   WYNWLLLYTEWLRRRCYCFVRSCC 25


>01_07_0235 + 42198662-42199615,42200129-42200746
          Length = 523

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +2

Query: 95  FFEDGRGRAVTVTSERYVAMIEEFFIPELQNFSGFNARTWFQQDGA-TSHTSNTAMPVIR 271
           F  DG G  +T+T E   A++ + F    +  S      W   +   T H    A   IR
Sbjct: 298 FHRDG-GLGITLTKEIVSAVLFDLFAAGSETTS--TTIIWAMSELVRTPHVMERAQSEIR 354

Query: 272 QLFPGKVISKRGDI 313
           Q+  GK +    DI
Sbjct: 355 QVLQGKTVVSEADI 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,998
Number of Sequences: 37544
Number of extensions: 318539
Number of successful extensions: 682
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)