Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32582
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 46 2e-05
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 36 0.017
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 36 0.017
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 36 0.017
AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a prot... 30 1.1
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p... 29 2.0
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor... 29 2.0
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ... 29 2.0
AF101305-4|AAR85910.1| 342|Caenorhabditis elegans Serpentine re... 29 3.5
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 28 4.6
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 27 8.0
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 27 8.0
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Frame = +2
Query: 8 PKLKHQKPLHSPKVTVWAAMSAHGILXPYFFEDGRGRAVTVTSERYVAMIEEFFIPELQN 187
P + Q+ + + V+A ++A+G F G + V Y+ M++ +P ++
Sbjct: 243 PNSRVQRTGYPKGIMVFAGITANGKTPLIFVPQG----IKVNGNNYLDMLKTELMPWVKK 298
Query: 188 FSGFNARTW-FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDIS*PPRSPDLTPMDFFCG 364
F W FQQDGA +H FP + + PP SPDL PMD+
Sbjct: 299 H--FKKTKWTFQQDGAPAHKHKNVQAWCESNFPDFIAFNQW----PPSSPDLNPMDYSVW 352
Query: 365 ATLRLK 382
+ L K
Sbjct: 353 SVLEAK 358
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 340 DPDGFFLWGYLKAKVYDTNPRSIEALKENIRREMTSISSVTCRAVIDNFRRRLQECRD 513
+P + +W L+AK R+I++LK+++++ + RA +D+F RRL+ R+
Sbjct: 345 NPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDSFPRRLEASRE 402
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 36.3 bits (80), Expect = 0.017
Identities = 29/86 (33%), Positives = 43/86 (50%)
Frame = +2
Query: 128 VTSERYVAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKRG 307
+ S Y ++E L+++S + R FQQD AT H SN+ R F K I+
Sbjct: 201 MNSTDYQNVLELELSKYLRHYSRKDFR--FQQDNATIHVSNST----RDYFKLKKINL-- 252
Query: 308 DIS*PPRSPDLTPMDFFCGATLRLKY 385
+ P RSPDL P++ G +R+ Y
Sbjct: 253 -LDWPARSPDLNPIENLWGILVRIVY 277
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 36.3 bits (80), Expect = 0.017
Identities = 29/86 (33%), Positives = 43/86 (50%)
Frame = +2
Query: 128 VTSERYVAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKRG 307
+ S Y ++E L+++S + R FQQD AT H SN+ R F K I+
Sbjct: 201 MNSTDYQNVLELELSKYLRHYSRKDFR--FQQDNATIHVSNST----RDYFKLKKINL-- 252
Query: 308 DIS*PPRSPDLTPMDFFCGATLRLKY 385
+ P RSPDL P++ G +R+ Y
Sbjct: 253 -LDWPARSPDLNPIENLWGILVRIVY 277
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 36.3 bits (80), Expect = 0.017
Identities = 29/86 (33%), Positives = 43/86 (50%)
Frame = +2
Query: 128 VTSERYVAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKRG 307
+ S Y ++E L+++S + R FQQD AT H SN+ R F K I+
Sbjct: 331 MNSTDYQNVLELELSKYLRHYSRKDFR--FQQDNATIHVSNST----RDYFKLKKINL-- 382
Query: 308 DIS*PPRSPDLTPMDFFCGATLRLKY 385
+ P RSPDL P++ G +R+ Y
Sbjct: 383 -LDWPARSPDLNPIENLWGILVRIVY 407
>AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a protein
protein 21 protein.
Length = 253
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 14 LKHQKPLHSPKVTVWAAMSAHGILXPYFFEDGRGRAVTVTSERYVAMIEEFF-IPELQNF 190
LK +K +H+ ++T W+ I FF+D + + + + IE F +P+ +N
Sbjct: 81 LKAKKCVHATELTFWSFSFNDIISILQFFDDQVLKRIEILCTERIDHIERIFDLPQWKNA 140
Query: 191 SGFNAR 208
S F R
Sbjct: 141 SNFELR 146
>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 379 KVYDTNPRSIEALKENIRREMTSISSVTCRAVIDNFR 489
KV P + A K IRR + SI +TC A ++N +
Sbjct: 113 KVLKKEPPTQMAEKPKIRRAIVSIEGMTCHACVNNIQ 149
>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
transporting ATPase protein.
Length = 1238
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 379 KVYDTNPRSIEALKENIRREMTSISSVTCRAVIDNFR 489
KV P + A K IRR + SI +TC A ++N +
Sbjct: 113 KVLKKEPPTQMAEKPKIRRAIVSIEGMTCHACVNNIQ 149
>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 379 KVYDTNPRSIEALKENIRREMTSISSVTCRAVIDNFR 489
KV P + A K IRR + SI +TC A ++N +
Sbjct: 113 KVLKKEPPTQMAEKPKIRRAIVSIEGMTCHACVNNIQ 149
>AF101305-4|AAR85910.1| 342|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 2 protein.
Length = 342
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -2
Query: 584 IYIKSLKNGNNFLKITSPKCN-----PLRSRHSCKRRLKLSMTARHVTDEMLVISLRMFS 420
+ ++ + +G +FL P N P RSR ++ KLS A VT +L + + +
Sbjct: 70 VSVRIILHGKDFLNYVGPWQNGCELFPDRSRCDLRKLYKLSAFAIEVTPFVLTVERFIAT 129
Query: 419 FRAS 408
FRAS
Sbjct: 130 FRAS 133
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 145 ISLRRNSNCAPSAILKEVRP*DTMG*HSG 59
+S+ R + C PS + +E+ P TMG H G
Sbjct: 194 VSVSRQNGCPPSEVYEEIAPIGTMG-HVG 221
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 125 TVTSERYVAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKR 304
T+T++ Y A ++ + E N G + +F D A H + ++ L G +
Sbjct: 213 TITADYYCAQLDR--VAEKTN--GKYEKLYFLHDNARPHVAKKTFQKLQDL--GWTVLPH 266
Query: 305 GDIS*PPRSPDLTPMDF 355
PP SPDL P D+
Sbjct: 267 -----PPYSPDLAPTDY 278
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 125 TVTSERYVAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKR 304
T+T++ Y A ++ + E N G + +F D A H + ++ L G +
Sbjct: 188 TITADYYCAQLDR--VAEKTN--GKYEKLYFLHDNARPHVAKKTFQKLQDL--GWTVLPH 241
Query: 305 GDIS*PPRSPDLTPMDF 355
PP SPDL P D+
Sbjct: 242 -----PPYSPDLAPTDY 253
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 125 TVTSERYVAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKR 304
T+T++ Y A ++ + E N G + +F D A H + ++ L G +
Sbjct: 213 TITADYYCAQLDR--VAEKTN--GKYEKLYFLHDNARPHVAKKTFQKLQDL--GWTVLPH 266
Query: 305 GDIS*PPRSPDLTPMDF 355
PP SPDL P D+
Sbjct: 267 -----PPYSPDLAPTDY 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,730,781
Number of Sequences: 27780
Number of extensions: 278522
Number of successful extensions: 661
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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