Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32582
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    29   0.047
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 0.047
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 173 PELQNFSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKRGDI-S*PPRSPDLTPM 349
           PEL N  G      F  D A  HTS     V RQ    K++    D+   PP SPDL P 
Sbjct: 232 PELTNRKG----VVFHHDNARPHTSL----VTRQ----KLLELGWDVLPHPPYSPDLAPS 279

Query: 350 DFFCGATLR 376
           D+F   +L+
Sbjct: 280 DYFLFRSLQ 288


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 8    PKLKHQKPLHSPKVTVWAAMSAHGILXPYFFE 103
            P+LK QKP  SP          +GI  P F E
Sbjct: 1124 PQLKPQKPFTSP----GGIPGPNGIKMPSFME 1151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,929
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)