Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32572
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.63
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 1.1
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 28 1.1
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 1.1
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.9
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 1.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 4.5
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 4.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 5.9
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 388 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 558
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +1
Query: 403 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 573
+ ++ +KS+ + V+ + P+ S + QA E P S T+ A A + +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585
Query: 574 --MVKKIDL----APTVESDAAAVPEIKTP 645
M K+ DL PT ++++A+VP+I P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 1.1
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +1
Query: 463 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKT 642
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 643 PEAADAPKLADNPVD 687
P AA AP A + VD
Sbjct: 83 P-AAVAPVEATSAVD 96
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.1
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = +1
Query: 436 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 615
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 616 AAAVPEI---KTPEAADAP 663
+ E+ KTP DAP
Sbjct: 348 SETDSEVAATKTPATEDAP 366
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 391 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 567
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 568 PNMVKK 585
VKK
Sbjct: 506 SEDVKK 511
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 443 KNQLLSLKIQKLKYKLPSLKFQKKKNL 523
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 327 VFWGYIVLFGLWYSGYLVVTNW 262
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 496 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAVPEIKTPEA 651
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 409 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 555
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Frame = +1
Query: 394 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 561
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 562 IIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVD 687
+ + V + ++ +V + P++ PK + D
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSD 998
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 415 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 552
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 412 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 549
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.126 0.337
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,553
Number of Sequences: 5004
Number of extensions: 32810
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -