Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32561
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   1.8  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   3.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.1  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.5  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.5  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 87  VTVALCLAFDKGLLSNF*IEYNNHKHYPRISY--EFKDVRKTFVIRHFSIIYWTFLYLNT 260
           + VALC+AF   ++ NF    +         Y  +FK +  TF+I    +I  TFLY   
Sbjct: 267 IIVALCVAFADNIMKNFSTSISIIISSLASVYLMDFK-ISLTFLIGVMLVIAATFLYTKP 325

Query: 261 ISKMFS*RSLY 293
            SK    R  Y
Sbjct: 326 ESKPSPSRGTY 336


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 119 FIKSKTKGHGNN-LSYNNYKLACSLVTGGCDKGNNGDY 9
           F+K    G G+  L+Y  Y   C  + GG D   + DY
Sbjct: 418 FLKDLKFGEGDGFLNYYIYNYNCPKIPGGIDASKSVDY 455


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 433 ILFFL*CVPRRTDSFCLF 380
           ++FFL  VP+ T SFC+F
Sbjct: 261 LIFFLNLVPKPTVSFCVF 278


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 436 TILFFL*CVPRR--TDSFCLF*VYFIQKFRSFVYRLRHYEVCRVS 308
           T++++L   P    T + C+F ++F+   R+     RH   C +S
Sbjct: 324 TLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLS 368


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 538 AGPIWLILVLNYLWKSRE 485
           +GPIW +   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 414 HQRKNKIVIFIYSEHFHIYLPF 479
           H   +++VI IYS H   YLP+
Sbjct: 103 HVGSSQVVIKIYSPHIKDYLPW 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,417
Number of Sequences: 5004
Number of extensions: 43590
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)