Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32559
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   1.5  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    27   2.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   6.2  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   8.1  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 345 ITMEDGNSIIYGLEHQTRSLSPQYAESEAIRFLIGTQ 455
           +T  DG+ + Y + HQ RS+  +Y++ E++  L+  Q
Sbjct: 33  VTSSDGSYVEYEIVHQKRSVWRRYSDFESLVKLMRRQ 69


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 232 HKILHYSKKIFNMCYS 185
           H+ LHY+KK++NM ++
Sbjct: 149 HRYLHYNKKLYNMIHA 164


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 577  VVNNEGAISLRCHVWKTLVCKAPVSSSNSTTC 482
            VV     I L C VW+ L+ K PV     T C
Sbjct: 1166 VVWTRPMIRLFCLVWRCLLAKEPVLLVGDTGC 1197


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 279 PSTFLIAPVTLNNILEN--TSKTLITMEDG 362
           P  F IA +  NN+LEN      L+T E G
Sbjct: 144 PHVFAIADLAYNNLLENKENQSILVTGESG 173


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 538 VWKTLVCKAPVSSSNSTTCTW 476
           VWK L    P S  N T C W
Sbjct: 96  VWKKLSDFEPHSKKNDTKCNW 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,330
Number of Sequences: 5004
Number of extensions: 50207
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)