Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32559
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0951 - 7329416-7329778,7329862-7330131,7330285-7330695,733...    31   0.68 
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    29   3.6  
01_05_0731 - 24700036-24700173,24700354-24700480,24701245-247013...    29   3.6  
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129...    27   8.3  
03_06_0137 - 31937541-31939892                                         27   8.3  

>06_01_0951 -
           7329416-7329778,7329862-7330131,7330285-7330695,
           7331149-7331300,7332400-7332469,7333941-7334018
          Length = 447

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 303 VTLNNILENTSKTLITMEDGNSIIYGLEHQTRSLSPQYAESEAIRFLIGTQSLK 464
           + ++N++ +  ++LI    G +I+  L  + RSL  Q+ + E  +F +   SLK
Sbjct: 391 LNISNLIRSVLESLIASHFGGNILDALFQEFRSLVAQHLKREKTKFALIVMSLK 444


>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 279 PSTFLIAPVTLNNILENTSKTLITMEDGNSIIY-GLEHQTRSLSPQYAESEAIRFLIGTQ 455
           P    I  VTL N  EN +K  +  E     +Y G+     +++    E+E    ++  +
Sbjct: 484 PGITSIDRVTLQNATENFAKEKLIGEGNYGRVYKGILPAESTITGSRQENE----IVAVK 539

Query: 456 SLKPNSNQVHVVELEEDTGALHTKV 530
            L+P+     V ELE    A+H  +
Sbjct: 540 LLQPSGTGTFVAELEAMFNAIHVNL 564


>01_05_0731 -
           24700036-24700173,24700354-24700480,24701245-24701357,
           24702116-24702271,24702439-24702516,24704102-24704203,
           24704325-24704393,24704743-24704892
          Length = 310

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 405 SPQYAESEAIRFLIGTQSLKPNSNQVHVVELEE 503
           SP+  ES+   F IG  S  PN N   + E EE
Sbjct: 159 SPRRGESQQASFAIGFNSDSPNFNSCKIWEFEE 191


>07_03_1502 +
           27010328-27010509,27010715-27010973,27011989-27012975,
           27013388-27013822
          Length = 620

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 343 NVLLVFSNILLRVTGAIKKVEGSSILIIN*NMSQIVRHKILHYSKKI 203
           +VL+  S++LL V G +   EG  + ++    SQI R     +SK +
Sbjct: 465 SVLVELSSVLLEVLGQVMDAEGKELEVLVGLSSQICRVSPKSFSKAL 511


>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 472 EFGLRLCVPIKNLIASLSAYCGDND 398
           + GL  CVP+ N + ++   CGD++
Sbjct: 171 KLGLGSCVPVANSVLNMYGKCGDSE 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,213,112
Number of Sequences: 37544
Number of extensions: 266999
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)