Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32556
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    28   1.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   3.2  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   4.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   4.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   5.6  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   5.6  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    25   7.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
 Frame = -3

Query: 330 ALPSNEEDARDISTAAPACCRHSSACVDSSTDATPAVSVCSALYSL-RQAAALRASDRYS 154
           A P   ED +DIS      C++ +   D   + T   + C+   +L  +  +L AS   S
Sbjct: 46  ARPVKSEDLKDISPLIQQVCKNGTCAGDGFCNGTGGSASCTGCPALNNRIRSLNASKSQS 105

Query: 153 --RMLETSAPSEPPQRERCADRT 91
             + L  +  S P   E  A  T
Sbjct: 106 GRKSLSPNPSSVPSSTETKASPT 128


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 458 FLPSQYARRIYRNHNERLYWLHNVLIRHLNDEFVQNRDSLERMYRLLKNSGCR 616
           F+ S +A  I+   N+ +   +    R L  EF+ + DSL  +Y  +K++G R
Sbjct: 717 FVDSAHASDIHAYDNDHVSTKNKEFNRRLR-EFILDPDSLSGLYWSVKSAGVR 768


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 394 HQVVGVAEGNRVPGEVAAEPGRVA 323
           H +VGVA  N VPG+ A    +VA
Sbjct: 669 HDIVGVATYNIVPGQAAVYFSKVA 692


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 394 HQVVGVAEGNRVPGEVAAEPGRVA 323
           H +VGVA  N VPG+ A    +VA
Sbjct: 669 HDIVGVATYNIVPGQAAVYFSKVA 692


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/79 (24%), Positives = 40/79 (50%)
 Frame = -3

Query: 369 ATASQARSPRSQGALPSNEEDARDISTAAPACCRHSSACVDSSTDATPAVSVCSALYSLR 190
           ++A+ + S  S   +PS+       S+A       SS+ + SS+  +PA S  S + SL 
Sbjct: 27  SSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASS--SFITSLV 84

Query: 189 QAAALRASDRYSRMLETSA 133
            +++ ++S   + +  +S+
Sbjct: 85  SSSSQQSSSSSASLTSSSS 103



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -3

Query: 384 SVSPKATASQARSPRSQGALPSN-EEDARDISTAAPACCRHSSACVDSSTDATPAVSVCS 208
           S S   ++S   SP S   + S     ++  S+++ +    SSA + SS+ A+P  S  S
Sbjct: 61  SSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSS 120

Query: 207 ALYSLRQAAALRASDRYSRMLETS 136
              S   +++L AS   S M  +S
Sbjct: 121 HALS-SSSSSLVASSSSSGMSSSS 143


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 440 HIALAHFLPSQYARRIYRNHNERLYWLHNVLIRHLNDE 553
           HI ++HF PS Y +++      +     + L +HLN E
Sbjct: 39  HIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKHLNTE 76


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 648 TADPNLLLSISRHPEFFNNRYIRSNESRFCTNSSFKC 538
           T+D NLLL  +R  +  +++ I   E+  C    F C
Sbjct: 307 TSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFAC 343


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 421 AIDAVKAHSIGSFSPVAIRTEDIQESQRKTVLAPQCLD 534
           AID VK HS  + + V     DI E     VL   C+D
Sbjct: 91  AIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSACID 128


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -3

Query: 327 LPSNEEDA-RDISTAAPACCRHSSACVDSSTDATPAVSVCSALYSLRQAAALRASDRYSR 151
           +PSN        +T+ P+        ++ ST   P++ V S   SLR   +L       R
Sbjct: 352 VPSNSPATLNSYTTSVPSGMSRHPMLMNPSTPE-PSLGVNSP--SLRPLQSLNNVQNSYR 408

Query: 150 MLETSAPSEPPQRERCADRTNIGM 79
           +  T AP   P R   +D  +I M
Sbjct: 409 VASTQAPPPHPLRNYTSDAESISM 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,948
Number of Sequences: 5004
Number of extensions: 46830
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)