Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32556
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 30 1.5
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 30 1.9
09_03_0095 + 12323371-12324411 29 2.5
05_03_0467 - 14366969-14367742,14368335-14368754,14370339-143704... 29 3.3
09_02_0574 - 10820107-10820154,10820313-10820432,10820608-108207... 29 4.4
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 29 4.4
02_05_0762 + 31562589-31563272 29 4.4
01_05_0670 - 24159922-24160014,24160127-24160410,24160856-241609... 29 4.4
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657... 28 5.9
01_01_0468 + 3454254-3454574,3454688-3454828,3454907-3455059 28 5.9
12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912... 28 7.7
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 7.7
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 7.7
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 28 7.7
01_01_1180 - 9401669-9402412,9402672-9402698 28 7.7
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 369 ATASQARSPRSQGALPSNEEDARDISTAAPACCRHSSACVDSST-DATPAVSVCSALYSL 193
ATA+ + S S GA NEE+ D S CCRHS A + A+ C +
Sbjct: 44 ATATPS-SLGSAGADDDNEEE-EDGSAGPEICCRHSQAALAREVRTQVDALHRCFSWRHA 101
Query: 192 RQAAALRAS 166
+AAA RA+
Sbjct: 102 DRAAAKRAT 110
>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 351 RSPRSQGALPSNEEDARDIST--AAPACCRHSSACVDSSTDATPAVSVCSALYSLRQAAA 178
RS + GA+ S+ D +S A PA CR A + T+ PAVS L +R A
Sbjct: 973 RSRATLGAV-SHRVDWNSLSDLPAPPAACRRRIAYLRKKTNIRPAVSRVCDLLGIRYARY 1031
Query: 177 LRASDRY 157
L R+
Sbjct: 1032 LEKEKRW 1038
>09_03_0095 + 12323371-12324411
Length = 346
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 128 LGALVSNMREYLSLARRAAACLKEYRALHTDTAGVASVLESTHALLCRQQAG-AAVLMSR 304
L ALV + YL L RRA + Y A++ T VA+ L A AA ++
Sbjct: 174 LAALVRRVGAYLPLLRRALLLAQAYLAIYFATLAVAAAATGLEPLRFFHAASPAAYAWTQ 233
Query: 305 ASSSL 319
A+ SL
Sbjct: 234 AAQSL 238
>05_03_0467 -
14366969-14367742,14368335-14368754,14370339-14370496,
14370571-14370664,14371536-14371649,14371794-14371985,
14372095-14372176,14372280-14372471,14372773-14373371
Length = 874
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 170 ARRAAACLKEYRALHTDTAGVASVLESTHALLCRQQAGAAVL 295
A R LK R DTA A+ E+ L R++ GAAV+
Sbjct: 57 ALRKKEALKSLRRARKDTAAAAAAAEAASNALPREEDGAAVV 98
>09_02_0574 -
10820107-10820154,10820313-10820432,10820608-10820751,
10821197-10821248,10821475-10821556,10821872-10822076,
10822147-10822192,10823556-10823632
Length = 257
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3
Query: 372 KATASQARSPRSQGALPSNEEDARDISTA 286
KA ASQA +P S+ PS+EE+A + T+
Sbjct: 67 KALASQASAPVSEEKPPSSEENALAVDTS 95
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -3
Query: 378 SPKATASQARSPRSQGALPSNEEDARDISTAAPACCRHSSACVDSSTDATPAVSVCSALY 199
S +++S + SPR+ + P + R + A+ + SS+ S A+PA + +A
Sbjct: 8 STSSSSSASSSPRAPSSPPPWVQ-LRSLLVASSSSSSSSSSLAASGNSASPAAAAAAASA 66
Query: 198 SLRQAAALRASDR 160
S A+ SDR
Sbjct: 67 SFSPASYSPHSDR 79
>02_05_0762 + 31562589-31563272
Length = 227
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 388 PDENPPRLPGCAIDAVKAHSIGSFS 462
P +PP + GC D VK HSIGS S
Sbjct: 193 PPPSPPSI-GCFEDVVKYHSIGSTS 216
>01_05_0670 -
24159922-24160014,24160127-24160410,24160856-24160979,
24161174-24161320,24161752-24161837,24162039-24162234
Length = 309
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 345 PRSQGALPSNEEDARDISTAAPACCRHSSACVDSSTD 235
PRS + E + +I A+ ACCR C++S T+
Sbjct: 31 PRSPAEIEDEEIEDEEIEAASAACCR---ICLESETE 64
>12_02_0776 -
23064167-23064239,23065214-23065518,23065614-23065727,
23065812-23065918,23065997-23066143,23066227-23066326,
23066421-23066522,23066702-23066776,23066973-23067152,
23067266-23067355,23067435-23067559,23067847-23067910,
23067993-23068197,23068818-23068966
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 391 DENPPRLPGCAIDAVKAHSIGSFSP 465
D++PP LP CAI V + SP
Sbjct: 77 DDHPPLLPACAIPVVHLRDVPDASP 101
>01_01_0468 + 3454254-3454574,3454688-3454828,3454907-3455059
Length = 204
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 129 WGRSSPTCGSTCRWRAGLRPVSRSTGRCTRIPPASRP 239
WGR R R GLR T RC R PP P
Sbjct: 37 WGRGGERLSLLVRLRRGLRLAV--TSRCGRAPPEKNP 71
>12_02_0928 +
24488891-24489675,24490369-24490421,24490479-24491229,
24491322-24491533,24491780-24492570,24492686-24492784
Length = 896
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 113 RCGGSLGALVSNMREYLSLARRAAA 187
R G L L + +RE L LARRAA+
Sbjct: 59 RSAGELAELAAQLREALELARRAAS 83
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 409 LPGCAIDAVKAHSIGSFSPVAIRTEDIQESQRK 507
LPG D +++HS + P+A + +I + +RK
Sbjct: 679 LPGSGRDGIESHSFDARDPLAEKKTEIAQCRRK 711
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 27.9 bits (59), Expect = 7.7
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Frame = -3
Query: 441 CFNSVDCTTRKPWWIFIRLSVSPKATASQARSPRSQGAL------PSNEEDAR--DISTA 286
C +SVD +PW IFI A+ ++ G++ P EE R D
Sbjct: 408 CCHSVDPDVLEPWVIFITKKFLETPFANMGHLVQANGSMGPNSERPQGEEKGRGGDRKWE 467
Query: 285 APACCRHSSACVDSSTD-ATPAVSVCSALYSLRQAAALRASDRYSRMLETSAPSEP 121
C + + D A PA S + + AA RA+ L + ++P
Sbjct: 468 RDLCPSEGTGARGTRGDPAGPAASAAATAEAEESAARARAAGAPPASLPSQLTADP 523
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 378 SPKATASQARSPRSQGALPSNEEDARDISTAAPACCRHSSACVDSSTDATPAVSVCSALY 199
S +AT + A SPR P +D++ AP+ + + + S +P S A+
Sbjct: 184 SERATTAAAASPRPPALAPPASNSLKDMARTAPSASSKAPSTLQKS-KLSPRPSPDKAVA 242
Query: 198 SLR 190
SL+
Sbjct: 243 SLK 245
>01_01_1180 - 9401669-9402412,9402672-9402698
Length = 256
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -3
Query: 369 ATASQARSPRSQGALPSNEEDARDISTAAPACCRHSSACVDSSTDATPAVSVCSALYSLR 190
A A+ A + G S A S+AAPA + + ++T A A + SA +
Sbjct: 71 AAAAAAGEDAAGGEEDSRASPANRASSAAPAAAADPRSALTATTAAPAAPAAFSASEATE 130
Query: 189 QAAALRASD 163
AAA A +
Sbjct: 131 AAAATAAQE 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,092
Number of Sequences: 37544
Number of extensions: 370130
Number of successful extensions: 1515
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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