Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32543
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    29   0.52 
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    29   0.52 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   4.9  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 333 SPNQQAMALGAVQVAGSVLASSIVERAGRKPLLLTT--ALVSGAXMCALATWFL 488
           +P    + + A     +++A  +++  GR+ LLL T   +++   +CA+A  FL
Sbjct: 372 NPTATGLIIAATNFVFTIVAFGVIDFFGRRILLLLTVWGMIAALIVCAVAFHFL 425


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 478 VASAHMXAPDTSAVVSSSGFLPALSTMLEASTEPATCTAPSAMACWLGESGGRAPPAAS 302
           VA   +   D  A+       P ++ +LEAS+ P+T   PS       E+    P +++
Sbjct: 108 VAGLWVPPADALALAKDYSMTPFINALLEASSTPSTYATPSRPTAQKSETSEGEPESST 166


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 451 DTSAVVSSSGFLPALSTMLEASTE-PATCTAPSAMACWLGESGGRAPPAASVKISPAKLS 275
           DTS   S+S  +PA S+   AST   ++   PS+ +  L  S   A  ++S   SP   S
Sbjct: 11  DTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSS-SSSPLSSS 69

Query: 274 TGMAP 260
           +  +P
Sbjct: 70  SFTSP 74


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 451 DTSAVVSSSGFLPALSTMLEASTEPATCTAPSAMA 347
           DTS+ VSS+   P+L+  L+ S  P+T T P   A
Sbjct: 155 DTSSTVSST---PSLNHSLQNSMPPSTPTPPPVWA 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,195,343
Number of Sequences: 5004
Number of extensions: 15204
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)