Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32541
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 135 4e-33
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 132 2e-32
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 101 8e-23
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 46 3e-06
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 31 0.14
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.31
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.41
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.7
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 1.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.7
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 2.9
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 2.9
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 2.9
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 2.9
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 3.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 3.8
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.1
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 6.7
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 6.7
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 6.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 6.7
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 8.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 8.9
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 8.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 8.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.9
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 135 bits (326), Expect = 4e-33
Identities = 62/109 (56%), Positives = 83/109 (76%)
Frame = -3
Query: 514 TNDKGCLSKEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIF 335
TNDKG LSKEEI+RMV+EAEKY+ ED+ + IQAKN LESY +S++++++D LK+K+
Sbjct: 502 TNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVD 561
Query: 334 DXDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 188
DK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 562 ASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 132 bits (320), Expect = 2e-32
Identities = 61/109 (55%), Positives = 83/109 (76%)
Frame = -3
Query: 514 TNDKGCLSKEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIF 335
TNDKG LSKEEI+RMV EAEKY+ ED+ + IQAKN LESY +S++++++D LK+K+
Sbjct: 502 TNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVD 561
Query: 334 DXDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 188
DK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 562 ASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 101 bits (241), Expect = 8e-23
Identities = 49/109 (44%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Frame = -3
Query: 511 NDKGCLSKEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTM-EDEKLKEKIF 335
NDKG LS+E+IERMV EAE++ ED KE I+A+N LE+Y +S+K +DE+L K+
Sbjct: 533 NDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVD 592
Query: 334 DXDKQTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGIYNPIITKMY 191
DKQ +LD D +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 593 PEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 46.4 bits (105), Expect = 3e-06
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = -3
Query: 496 LSKEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTME--DEKLKEKIFDXDK 323
L+ EIE MV +AEKYR D +KE I+ N ES C ++S ++ +KL ++ + +
Sbjct: 550 LTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLR 609
Query: 322 QTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 188
I D K ++ E+ + K E++ + + +Y+
Sbjct: 610 SKITDLRETVAKVNAGDEGITSEDMKKKIDEIQQLSLKVFESVYK 654
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/61 (22%), Positives = 34/61 (55%)
Frame = -3
Query: 487 EEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIFDXDKQTILD 308
EE++ +NEA+K NE ++ I+ +L+ +++ +++ + + KQT+++
Sbjct: 19 EELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLIN 78
Query: 307 K 305
K
Sbjct: 79 K 79
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.31
Identities = 23/90 (25%), Positives = 42/90 (46%)
Frame = -3
Query: 493 SKEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIFDXDKQTI 314
+KEE+E +NE + E ++Q + ++N ++ +K +E EKLKE + D
Sbjct: 1606 TKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVE-EKLKENSANFDV--- 1661
Query: 313 LDKCNDTIKWLDSNQLADKEEYEHKQKELE 224
K + + A YE K ++L+
Sbjct: 1662 --KLKKVVAETEFRSKAKISVYEKKTRDLQ 1689
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.41
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 505 KGCLSKEEIERMVNEAEKYRNEDD 434
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 1.7
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = -3
Query: 496 LSKEEIERMVNEAEKYRNEDDKQKEPIQAK-NALESYCFSMKSTMEDEKLKEKIFDXDKQ 320
L++E +ER+ E ++YR + + E K +LE ++ + L+ + D +
Sbjct: 951 LAEEMVERVKTEYDEYRLQTSESLEKNHLKITSLEQRIVILQDEIASSSLRCENITKDSE 1010
Query: 319 TILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIY 215
T + + K L +N+L+ E + E E Y
Sbjct: 1011 TRVALLLEENKHL-NNELSSHRNAEKQHLEKENDY 1044
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 349 KEKIFDXDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 224
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = -3
Query: 463 EAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKL-KEKIFDXDKQTILDKCNDTIK 287
EAE+ + E ++Q+ Q K E + K E EKL KE+I ++Q ++ + ++
Sbjct: 94 EAERLKREKERQQRE-QEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLR 152
Query: 286 WLDSNQLADKEEYEHKQKE 230
+ Q +E+ +K+++
Sbjct: 153 EKEEAQRLRQEQILNKERQ 171
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 484 EIERMVNEAEKYRNEDDKQ-KEPIQAKNALESYCFSMKSTMED 359
E+ EAE DK E + KNALE Y + ++ ++D
Sbjct: 554 EVLEKYREAEHQMIATDKLVAETVDRKNALEEYIYDTRAKLDD 596
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 466 NEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIFDXDKQTILDKCNDTIK 287
N+ E + DDKQ + KN+LE+ M+ + E K D ++ LDK D K
Sbjct: 1272 NKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEG-DAKTGDDNEMEDLDKMEDLEK 1330
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 2.9
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = -3
Query: 496 LSKEEIERMVNEAEKYRNEDDKQKEPIQAKNALE-SYCFSMKSTMEDEKLKEKIFDXDKQ 320
L+ + ++ + E E K+ E ++ KN+ + + ++ E LK +K
Sbjct: 485 LASKNSDKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKD 544
Query: 319 TILDKCNDTIKWLDSN--QLADK-EEYEHKQKELEGIYNPII 203
++++ IK + N +L +EY +K K+ E YN ++
Sbjct: 545 RLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVM 586
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 180 EESPEVCRASRAEHPEPE 127
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 511 NDKGCLSKEEIERMVNEAEKYRNED 437
N CL++E++E +VN E Y D
Sbjct: 570 NQVHCLTEEDLEELVNLTEGYSGSD 594
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 493 SKEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKS 371
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 466 NEAEKYRNEDDKQKEPIQA--KNALESYCFSMKSTMEDEKLKEKI 338
NE KY E+D K PI A NAL S K + D L + I
Sbjct: 1572 NEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAKPI 1616
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -3
Query: 445 NEDDKQKEPIQAK-NALESYCFSMKSTMEDEKLKEKIFDXDKQTILDKCNDTIKWLDSNQ 269
NE + Q + ++ K N + + E+ +K + + D L+ + + L N
Sbjct: 590 NELNSQIDELKLKLNEANKKYQELAISFENSNVKTQSVEPDNGLSLEALKNENQTLLKNL 649
Query: 268 LADKEEYEHKQKELEGIYNPI 206
YEH QK + ++N +
Sbjct: 650 EDSTARYEHLQKSFKNVFNQL 670
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 141 HPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTSPL 13
H +P +L+PPS R++KP + T ++ +SPL
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPL 211
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.0 bits (52), Expect = 6.7
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = -3
Query: 490 KEEIERMVNEAEKYRNEDD---------KQKEPIQAKNALESYCFSMKSTMEDEKLKEKI 338
KE ER+ E + NED K+K IQ KN+ + + ST E K+ I
Sbjct: 487 KETPERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRVYEMPKDTI 546
Query: 337 FDXDKQTILDKCND 296
K +I + +D
Sbjct: 547 PSRFKTSISTEVHD 560
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 6.7
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = -3
Query: 508 DKGCLSKEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIFDX 329
+K SKE ++ EAE+ E +E + + + S K +++ LK K D
Sbjct: 436 EKDEASKERLKAARKEAEQVEEETRPIREKYELEKSRGSELQDAKRRLDE--LKAKAEDA 493
Query: 328 DKQTILDKCNDTIKWLDSNQLADKEEYEHKQK 233
+++ D +K+ L + EY +QK
Sbjct: 494 ERRNDFTLAAD-LKYYGIPDLQKRIEYLEQQK 524
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -1
Query: 186 VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 79
V +SP R SR P E P A PPSRR+
Sbjct: 891 VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -3
Query: 442 EDDKQKEPIQAKNALESYCFSMKSTMEDE 356
E+D ++EP +++ SY F + ++E +
Sbjct: 905 ENDPRREPFESRTKCYSYIFEILDSLESQ 933
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/79 (20%), Positives = 37/79 (46%)
Frame = -3
Query: 466 NEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIFDXDKQTILDKCNDTIK 287
+EA K ++KQ P+ + N + K +E + + + DK+ D + +
Sbjct: 47 SEAAKITT-NEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEE 105
Query: 286 WLDSNQLADKEEYEHKQKE 230
D+N+ +++E + ++ E
Sbjct: 106 EADANEEEEEDEEDDEEDE 124
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 301 NDTIKWLDSNQLADKEEYEHKQKELEGIYNP 209
N+ +K D + ++ ++E E + +GIY P
Sbjct: 141 NNVVKEDDKSSISSEDEEEELRSAKDGIYRP 171
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -3
Query: 490 KEEIERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKL 350
+EE E+ + E K R + DK++E + + LE + + + K+
Sbjct: 694 REEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKI 740
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 448 RNEDDKQKEPIQAKN 404
+ E +K+KEPIQAK+
Sbjct: 96 KTEKEKEKEPIQAKH 110
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 8.9
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -3
Query: 478 ERMVNEAEKYRNEDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKIFDXDKQTILDKC- 302
E ++EK ++ K + KNA ++ M DE+ E K+ K
Sbjct: 100 EEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSK 159
Query: 301 NDTIKWLDSNQLADKEEYEHKQKE 230
+D + LD + E+ + K+K+
Sbjct: 160 DDGSEALDDGDIESSEKDKKKKKK 183
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 24.6 bits (51), Expect = 8.9
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = -3
Query: 511 NDKGCLSKE-EIERMVNEAEKYRN-EDDKQKEPIQAKNALESYCFSMKSTMEDEKLKEKI 338
NDK ++ EI + E +K +N + + +++ ++ N+L + +E+ E+
Sbjct: 822 NDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSL--------TAVENLLTTERA 873
Query: 337 FDXDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 230
DK+ IL + + + ++ + K++ E+ Q+E
Sbjct: 874 IALDKEEILRRTQERLANIEDSFSETKQQNENLQRE 909
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,930
Number of Sequences: 5004
Number of extensions: 35025
Number of successful extensions: 185
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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