Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32540
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 168 5e-43
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 163 2e-41
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 1.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.8
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 3.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 3.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 6.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 168 bits (409), Expect = 5e-43
Identities = 83/137 (60%), Positives = 100/137 (72%)
Frame = -3
Query: 430 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLXKRNRMDAYNIIKF 251
KA AQ+ V KG H K RK+R S FRRPKT E R PKY RKS+ +R+D Y II
Sbjct: 5 KAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVN 64
Query: 250 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVR 71
P+ SE+AMKKIED+NTLVF VH ANK IK AVKKLY ++ K+NTLIRP+G KKA+V+
Sbjct: 65 PINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124
Query: 70 LARDYDALDVANKIGII 20
L+ D DALDVAN+IG +
Sbjct: 125 LSADADALDVANRIGFL 141
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 163 bits (395), Expect = 2e-41
Identities = 80/137 (58%), Positives = 98/137 (71%)
Frame = -3
Query: 430 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLXKRNRMDAYNIIKF 251
KA AQ+ V KG H K +K+R S FRRPKT + R PKY RKS+ R+D Y II
Sbjct: 5 KAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVN 64
Query: 250 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVR 71
P+ SE+AMKKIED+NTLVF VH ANK IK AV+KLY + K+NTLIRP+G KKA+V+
Sbjct: 65 PINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124
Query: 70 LARDYDALDVANKIGII 20
L+ D DALDVAN+IG +
Sbjct: 125 LSADADALDVANRIGFL 141
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 164 MVLVCTCVDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLXQRLS 304
MV++ C+D KD + + C + + EF DV+ + + Q S
Sbjct: 787 MVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQYAS 833
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 47 QCVIISSESYVRFLLTIRPDESVDFSNIY 133
+C+ I E + FL I+P E+V F ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 44 VQCVIISSESYVRFLLTI--RPDESVDFSNIYIIEFLDCSLDMV 169
V I S +S+ FL+ D+SVD ++ I+ +CS D++
Sbjct: 45 VVTTITSYQSFANFLVDYCKNQDQSVDIKSLCILGTFNCSADIL 88
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 5 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDESVDF 121
+W +++ A FV + + +S +RFL ++P + DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 3.7
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Frame = -1
Query: 282 IAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQTSTI------SRLQSRNSMI*MLL 121
IA+ T SL + K+ R + T PW +LS+Q I +RL S+N + +
Sbjct: 340 IAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKTVSNVY 397
Query: 120 ---KSTLSSGLMVRRKRTYDSL 64
+T+SSG+M + R + +
Sbjct: 398 DESNATISSGVMQKDLRKTEEI 419
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/65 (18%), Positives = 31/65 (47%)
Frame = -3
Query: 319 HPKYPRKSLXKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 140
HP+ +S + + A+++ +F E ++ +DN T I H + ++ + A
Sbjct: 1077 HPESSIRSAVLQ-ALQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSF 1135
Query: 139 YDINV 125
+++ +
Sbjct: 1136 FELQI 1140
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = -3
Query: 403 VKGEHGKRVRKIRNSVHFRRP-----KTFEPPRHPKYPRKSLXKRNRMDAYNIIKFPLTS 239
++ ++ +R R+ RNS+ + T + P PRK R + ++ + + PL+
Sbjct: 1439 LEDQYLERKRRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRKKTNSGSSLSTPLSQ 1498
Query: 238 EAAMKKIEDNNT 203
E+++ + NT
Sbjct: 1499 ESSLARSGRKNT 1510
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 11 NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 106
++ +NF NV C I +S F IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,283
Number of Sequences: 5004
Number of extensions: 36829
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -