Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32535
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 28 1.2
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 1.2
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 3.5
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 26 4.7
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 25 6.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 6.2
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 272 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 352
NKF+ RF+++H +N ++ F K + +LF
Sbjct: 82 NKFFPRFIRTHSINSIRTFSKFQVIILF 109
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 209 PREISSQQFICISNNL*ISNTNKFYRFMKSHLLNLVKVFFKCLI 340
PREI SNN + +FY+ K HL++ V+ KC++
Sbjct: 160 PREIIFTSGATESNNAILKGVARFYKSRKKHLVS-VQTEHKCVL 202
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 272 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 352
NKF+ RF+++H +N ++ F K + +LF
Sbjct: 82 NKFFPRFIRTHSINSIRTFSKFQVIILF 109
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 272 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 352
NKF+ RF+++H +N ++ F K + +LF
Sbjct: 82 NKFFPRFIRTHSINSIRTFSKFQVIILF 109
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 272 NKFY-RFMKSHLLNLVKVFFKCLIRVLF 352
NKF+ RF+++H +N ++ F K + +LF
Sbjct: 82 NKFFPRFIRTHSINSIRTFSKFQVIILF 109
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 483 YIYISQIYCKFIRVVFTNDIIIYI 412
YI+ IY FI ++FT ++IYI
Sbjct: 328 YIFNKPIYIAFIILLFTLQLLIYI 351
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 4.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 32 PPRHVASPQETLSIPSTSR 88
PPR + PQ++ ++P TS+
Sbjct: 937 PPRQLIPPQQSTNVPGTSK 955
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 6.2
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 157 LYILITRECY*VSALP-YPARDIFTTIHLYL**FVNIKYKQVLSVYEKSSLKFSEGFF*M 333
LY I +E + L YP I+ T YL F+N K+ +LS L E
Sbjct: 827 LYDNILKETFNEELLSHYPPNIIYATFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLS 886
Query: 334 FNS 342
FNS
Sbjct: 887 FNS 889
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 14 HVT-LSAPPRHVASPQETLSIPSTSRTLIRCNIESQVL 124
H T L P H+ +T+ TS TL+R ++QVL
Sbjct: 163 HATKLDLPTLHLLGKYDTVLSTETSTTLVRACKDAQVL 200
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 322 FF*MFNSCFVRSILMENSFEYDTTTSPSIININYYI 429
F M N FVRS + S E+ +PS+ I Y+
Sbjct: 1523 FVEMENDAFVRSRFEQESGEFLQANAPSVDEIEQYL 1558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,459
Number of Sequences: 5004
Number of extensions: 47513
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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