Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32529
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    51   9e-08
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    33   0.019
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    29   0.41 
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   1.7  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   2.2  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.9  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   6.7  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   6.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.9  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    24   8.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    24   8.9  

>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 50.8 bits (116), Expect = 9e-08
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +3

Query: 156 VILNPVANKRKAKQEFEKYCEPXXXXXXXQVDVVQTASEGNAKEIVETL--RGTEAIIVA 329
           V +NP   K KAK  +E   EP         +VV T  + +AK I + L     + I+  
Sbjct: 110 VFINPHGGKGKAKHIWESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDGILSV 169

Query: 330 GGDGTLSETVTGLLRRNDQANMF--PVGVLPLGRTNS 434
           GGDG   E + GL  R+D    F  PV ++P G  N+
Sbjct: 170 GGDGLFHEVINGLGERDDYLEAFKLPVCMIPGGSGNA 206


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
 Frame = +3

Query: 12  LGAVAIYYAGATAKEKYEINILMRAACKEAA-IYGEALLPIERNPTVITVILN--PVANK 182
           LG VA   +GA   ++ + N+++   C +   +  + + P+E  P  + V L+  P    
Sbjct: 18  LGFVA-GISGAIYYDRRQKNLIIEKYCSQVRHLADQPMAPLEL-PRKLKVYLHGPPGDGI 75

Query: 183 RKAKQEFEKYCEPXXXXXXXQVDVVQTASEGNAKEIV 293
             A++EFE+Y  P       + + V++  EGN  E V
Sbjct: 76  YVAREEFEEYIRPIFNAAAIEFETVESKGEGNLLEQV 112


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 358 TVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTCKPXNNS 224
           + S   P P   +I +VP   +T +  +P  +V TT T  P N +
Sbjct: 183 STSTSCPPPTTILIVTVPTTTTTTTVGYPG-SVTTTLTGTPSNGT 226


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 25  LYTTLVRLQKKNMKLIYLCE 84
           LYTTL++L KK   +  LCE
Sbjct: 361 LYTTLIKLSKKERIMDVLCE 380


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 221 WFTIFLKFLFCFPLVGYR 168
           W TIFL F+ C  L G R
Sbjct: 199 WITIFLVFVICINLFGVR 216


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 337 SPPATIIASVPLNVSTISFAFPSEAVCTTSTCKPXNNSNGS 215
           +PP+  ++    N+S  S A       T   C P N   GS
Sbjct: 138 APPSANVSKASSNLSLASLAKTQPERATPEVCVPLNPDTGS 178


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 AKEIVETLRGTEAIIVAGGDGTLS 350
           AK ++    G ++IIV GGDG+L+
Sbjct: 281 AKNLISA--GIDSIIVCGGDGSLT 302


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +2

Query: 104 NLRRSSPAH*KKPHSHNSYSQPCSQQEESK 193
           +LRRSS +  KKP ++NS S+  S+++ SK
Sbjct: 137 HLRRSSRS--KKPVNYNSSSESESEEQISK 164


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -1

Query: 406 PTGNMFA*SFRLNNPVTVSDKVPSPPATIIASVPLNVSTISFAFPSEAVCTTSTCKPXNN 227
           PTGN          P + S  + +   T   SVP   + ++    +   CTTST  P  +
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTS 460

Query: 226 S 224
           +
Sbjct: 461 T 461


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 101 CNLRRSSPAH*KKPHSHNSYSQPCSQQEES 190
           C ++ SSP   K   +  SY+Q C +++ S
Sbjct: 139 CKIKLSSPDELKSLLNDESYAQFCKEEDAS 168


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = -1

Query: 379 FRLNNPVTVSDKVPSPP-------ATIIASVPLNVSTISFAFPSEA 263
           F  ++P  +S   P+PP       +T+ +S+P +  T S  FPS +
Sbjct: 225 FATSSPNFLSTSTPAPPNSNNANPSTLFSSIPSSRHTTSNHFPSNS 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,143
Number of Sequences: 5004
Number of extensions: 29984
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)