Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32528
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127...    30   0.11 
01_05_0382 - 21661973-21662124,21662367-21662659,21662994-216631...    29   0.95 
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960...    27   2.9  
05_04_0144 + 18389877-18390431                                         26   6.7  
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287           26   8.9  

>03_05_0559 -
           25610474-25610951,25611149-25611890,25612355-25612744,
           25613041-25613099,25613186-25613326,25613449-25613545,
           25614999-25615185
          Length = 697

 Score = 29.9 bits (64), Expect(2) = 0.11
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 322 SECMCESHCAAAECVPNRVTYDVTSQMSASALSCVRDHSSKRLNISGNHI 173
           S+C+C     A + +PN+      S M A+  S +   + K  + SG+++
Sbjct: 301 SKCICGVKVLADDLIPNQTLRSTISNMLATRASSITSGTGKHRSSSGSNV 350



 Score = 21.0 bits (42), Expect(2) = 0.11
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 343 MSDSMKTSECMCESHC 296
           M+D++ TS+C  +S C
Sbjct: 274 MADAVLTSKCCFDSFC 289


>01_05_0382 -
           21661973-21662124,21662367-21662659,21662994-21663178,
           21663268-21664023,21664118-21664390
          Length = 552

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 335 LHEDVGVYVRVALR-GGGVRAEPRHVRRHLADVRLGVVVRARPLVETIEHLREP 177
           L +     VRV+ R GGG RA   H R+  ++     V R RP++    H   P
Sbjct: 113 LFDGYATLVRVSFRGGGGARATGAH-RQIESEAYRAAVARGRPVLREFSHCPAP 165


>04_04_1371 +
           32995337-32995358,32995745-32995822,32995876-32996019,
           32997595-32997930,32998014-32998166,32998286-32998501,
           32998600-33000695
          Length = 1014

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 5   TSTSKSNQRXPKSKLRXDVERHCRAQQAAVCSAYTQVHYDLYYNQLYIPYRVLRS 169
           +S ++SN   P S  R D +  C   +   CS  T     LY++ LY    VL +
Sbjct: 104 SSLTRSNGTVPPSWGRGDGDDDCCLWERVKCSNITGRVSHLYFSNLYDSLEVLNA 158


>05_04_0144 + 18389877-18390431
          Length = 184

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 188 DVQSFRRVVAHARQRRGGHLRGD 256
           D  S RR    ARQR GGH  GD
Sbjct: 77  DRSSGRRPARPARQREGGHGAGD 99


>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
          Length = 540

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 332 HEDVGVYVRVALRGGGVRAEPRHVRRHLADVRLGVVVR 219
           HE+V   +R  L G G       +R HL+   LGV+ R
Sbjct: 152 HEEVRALLR-ELHGSGAAGNAVQLRDHLSMAALGVISR 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,580,145
Number of Sequences: 37544
Number of extensions: 139253
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)